Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02621 ATGGAAGAAACATGGAGATTGATGACTTGGTTAGTGTTTGTGGTGATGGTGGTATTGAGCATGAAACACAGTCATTGTTTGACTTTGAACAGCGAAGGGTTGGCACTGCAGAAGATGAGAGAGAGGGTTGTGAGAGACCCATTGGGGGCTTTATCGAATTGGAATAATGGCGAAGAAGGAGTTATTGATCCGTGCTCCTGGTTCGGAGTGCACTGCTCCCATGGCAGAGTTGTTTCCTTGAATTTGAAAGATCTATGTCTGTATGGAACACTAGCACCCGAAATTGGGAAGCTGGTTCACATAAAATCAATCATTTTGCGCAACAATTCTTTCTTCGGAGATATCCCAAAGGAGATACTACAATTAGAGGGACTTGAAGTTCTTGACTTGGAATATAACAACTTTAGTGGACCATTTCCATTAAAAGACCTTAGCAGCAATCCATCCCTTACCACTCTGCACATTGGCCAACAAGGAAATATAGTATATAGGCGGCAACTTCTCCAAGCAACAAATGTTGCTAAATCACCCAAAAGGGCCAAAACTAAGAAAGGTGATAACAAAGAGACCCCTTCACCATCAACATCACCTTTTCCCTCTTCATTATCACCAGTTTCTGAGACTTTCTCACCATCACTTTCACCATCAGAAAGTCCCTCAAATTCACCAACACCATCACCACTAAGCTCTCCAGAAGTTTCCCCTTCACCATTTTCCTCTCCCTCTAGTATCTTTTTAACTCCTTCACCCTCACCTTCACCTGTGGTAGCACCAACTCCAGAAATATCAGTTCCAGCAAATCCACCTGCTTTTGTGTCCACACCACCACATTCTAATTGGATTTCCATACCTTCCCCTGCTTTATCTTCAAACCAAGGGAATCCAAACAGTTCAAACTCAAAGAAACATTCTGTGATTATTTGGTCTACAGTTGGAGGTTTCTCCTTCCTGGTTTTGGTGTCAGCAATTGTTTTTGTTTGCTTCAGAAGTAGTAAAGTTACAACTGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAGCTGAGGAAAGCATTTGTAACAGGTGTTCCAAGTCTGAAACGAGCAGAACTTGATGCAGCTTGTGAAGATTATAGCAACATTATTGGTTCTGTGCCAGATGGGACTATTTATAAGGGGACTCTTTCCAGTGGAGTTGAGATAGCTGTAGCATCCTCTGCTGTGACATCATCTCAAAATTGGTCAAAAAATATGGGAGCTCAATTCCGAAAGAAGGTAGACATGTTATCAAGGGTGAACCACAAGAATTTTGTGAATCTTATTGGGTATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACCCTATTTGAGCATCTACACATTAGAGAAGCAGAACAACTAGACTGGGGAATGAGAATGAGGATAGCTATGGGAATAGCCTACTGTTTGGAGCATTTGCATCAGCTGACACCACCCATTGCCCACAAAAACCTGCAATCATCCACTATATACCTGACTGAAGATTATGCTGCTAAATTATCTGACCTTAGTTTCTGGAGTGACATAGGTGCTAGAAAAAAGGATTCTGAAGCCTCACAGACATTAGAAACAACTACAGCATATATAAAGGGCAATGTATATAGCTTTGGGGTAATATTGTTTGAATTGATAACAGGGAGAATTCCCTATGCAGTGGACAATGACTTTCTTGCAGATTGGGCAGCAGAATATATAAGGGGACAACCCTTGAGAGACTTGGTGGATGCAAGCTTGACCTCTTTGCAAGCACATGAAATTGAAAAATGGTCAGAAGTGATTAATAGCTGTGTACATCCAGATCCAGAAAAAAGGACAACTATGAGAGAGGTTACAGCCAAGTTGAAGGAAATAACTTCTATGGGACCTGATGGAGCAACTCCAAAAGCATCCCCTCTTTGGTGGGCAGAACTAGAAATTATGTCCACTGACTTCAGTTCAGACATTAATCCATAA 1995 0.417 MEETWRLMTWLVFVVMVVLSMKHSHCLTLNSEGLALQKMRERVVRDPLGALSNWNNGEEGVIDPCSWFGVHCSHGRVVSLNLKDLCLYGTLAPEIGKLVHIKSIILRNNSFFGDIPKEILQLEGLEVLDLEYNNFSGPFPLKDLSSNPSLTTLHIGQQGNIVYRRQLLQATNVAKSPKRAKTKKGDNKETPSPSTSPFPSSLSPVSETFSPSLSPSESPSNSPTPSPLSSPEVSPSPFSSPSSIFLTPSPSPSPVVAPTPEISVPANPPAFVSTPPHSNWISIPSPALSSNQGNPNSSNSKKHSVIIWSTVGGFSFLVLVSAIVFVCFRSSKVTTVKPWATGLSGQLRKAFVTGVPSLKRAELDAACEDYSNIIGSVPDGTIYKGTLSSGVEIAVASSAVTSSQNWSKNMGAQFRKKVDMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWGMRMRIAMGIAYCLEHLHQLTPPIAHKNLQSSTIYLTEDYAAKLSDLSFWSDIGARKKDSEASQTLETTTAYIKGNVYSFGVILFELITGRIPYAVDNDFLADWAAEYIRGQPLRDLVDASLTSLQAHEIEKWSEVINSCVHPDPEKRTTMREVTAKLKEITSMGPDGATPKASPLWWAELEIMSTDFSSDINP. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02621 664 ProSiteProfiles Protein kinase domain profile. 368 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02621 664 MobiDBLite consensus disorder prediction 189 217 - -
Seca6g02621 664 MobiDBLite consensus disorder prediction 218 234 - -
Seca6g02621 664 Gene3D Phosphorylase Kinase; domain 1 346 450 - -
Seca6g02621 664 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Seca6g02621 664 Pfam Protein tyrosine and serine/threonine kinase 373 628 IPR001245 GO:0004672|GO:0006468
Seca6g02621 664 SUPERFAMILY L domain-like 38 156 - -
Seca6g02621 664 Gene3D Ribonuclease Inhibitor 33 153 IPR032675 -
Seca6g02621 664 MobiDBLite consensus disorder prediction 172 244 - -
Seca6g02621 664 SUPERFAMILY Protein kinase-like (PK-like) 357 628 IPR011009 -
Seca6g02621 664 PANTHER PROTEIN MALE DISCOVERER 2 9 656 - -
Seca6g02621 664 FunFam Leucine-rich repeat receptor-like kinase 35 161 - -
Seca6g02621 664 FunFam Inactive receptor-like serine/threonine-protein kinase 342 450 - -
Seca6g02621 664 Gene3D Transferase(Phosphotransferase) domain 1 451 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02621 Seca-Chr6 89949300 89956002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02621 6 560 Receptor kinase-like Gene Family AT2G23950 27.148 3.84e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca6g02621 PK_Tyr_Ser-Thr 3.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02621 - - gmx:100814122 926.776