Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02614 ATGGCAGCAGCGTTGGAGTGCTGGTCTCGGCGCAACAGCAGCGACGAGGACATGGTGGAGCAGGTTCTCATGGAGGGTCCAACGTCCCAACCCAAGGATCCTTCCCTTCTCCATAAGAAGCTCCACAAGCTCACGCGCAACGTTTCCGAAGCCATTGCCTCTCTTAAGAACTCCCTCAACAATCTCAACCTCAACCTTGATTCTTCTAAACCTGACACGTGTCGCAGCAGCAACCTCGTCTGGGGAACCGTTGTTCGCAATCTCACCCAGCTCTACCCTGGTAGCCAGCTCCCTGAGAAGCTCATGTCCAACATTCGCAAGCACTATGATTCCTTGCCTCTCAGTTTTATTTTTTTTTTGTTTGGCAGTTATTCTCAGGCGGGGTTTGATGTGAAAGATGTGTTTCTTCACATCAAGCTGATGGAGCAAGCTTTAGAAGATGAGCAGGCTGCGATTTTGATTCAAGAGGAGTCTGATGGTGAGATGCAGCTACAGGGGTCTTTGTTCAAGTTGACATTTGCTTGCAATTCTCCAATTTCATGGCCTGCAATGTCAGGTGCATTGGATAGTTCCTCCATTTGCTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGTTTCACCCTTGGGATTGTTCTTCTACTTGTTCTGTCTGGAGCTGGGCAAGATAAGCCGGTCAGGACCCGTGTTGAAAGTGCTCTCAAGTTTGCCATGAAGAAGCCCAAATCCAGTGCTGTGAAGCTTCCCTTTGGACTTTGTGGATGTCAAGAGGAGAACTCCAAGGGAAGAGAAATTGGTGAGATTGAAGAAGATGGTGGCGATGCCTATTGTGGAAATGGGTTTTGGAATTTGAGCCAAAAGATTCAGCTTCAGGTGCCCTTGCCTAGTTCATCTTTTCTTGTATCAGTAGATGAATGGCAGACTATTCAGACGGGTGGGGATGAAATGGAAAAGTGGTTGTTGAACTCGGATAGTCTTGAGTTTGTAGAACAGATTGGACCCAATTCATATAAGGGGGCCTACATGGGGAAAAAGGTTGGCATTGAGAAGCTTAGAGGGTGTGACAAAGGGAACTCTTATGAGTTTGAGCTTAGGAAAGATCTGCTAGAACTGATGACTTGTGGGCATAAAAATATTTTGCAGTTTTATGGTGTTTGTGTGGATGACAATCATGGGTTATGTGTAGTCACGAAATTCATGGATGGTGGATCTGTTCATGACTTAATATCAAAAAATAAGAAACTTCAGAGCAAGGACATAGTAAGAATTGCAGTCGATGTGGCCGAGGGGCTCGAGTTTATGAATGATCATGGTGTTCCATACAGAGACCTTAATACGCAGAGGATTCTGTTGGATAAGCATGGGAATGCTAGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAGGGTGTTGGAGAGGCAATGGATTACGAAACTGATGGTTATCGGTGGCTAGCTCCAGAGATAATTGCTGGTGACCCAGAGAGTGTCACAGAGACATGGATGAGTAATGTTTATAGTTTTGGCATGGTAATTTGGGAGATGGTGACTGGTGAGGCTGCCTATTCTGCATTTTCACCTGTGCAAGCAGCAGTGGGCATTGCTGCTTGTGGCCTTAGACCTGAGATCCCCAAGGACTGCCCACAAACTCTAAAATCTCTTATGACAAAGTGCTGGAACAACACCCCTTCAAAACGCCCCCAGTTCTCTGAAATTTTAGCAATATTGCTGCGATCAAACAACACCAATAGGTAA 1752 0.4589 MAAALECWSRRNSSDEDMVEQVLMEGPTSQPKDPSLLHKKLHKLTRNVSEAIASLKNSLNNLNLNLDSSKPDTCRSSNLVWGTVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPLSFIFFLFGSYSQAGFDVKDVFLHIKLMEQALEDEQAAILIQEESDGEMQLQGSLFKLTFACNSPISWPAMSGALDSSSICCKKIQIFEKKGFTLGIVLLLVLSGAGQDKPVRTRVESALKFAMKKPKSSAVKLPFGLCGCQEENSKGREIGEIEEDGGDAYCGNGFWNLSQKIQLQVPLPSSSFLVSVDEWQTIQTGGDEMEKWLLNSDSLEFVEQIGPNSYKGAYMGKKVGIEKLRGCDKGNSYEFELRKDLLELMTCGHKNILQFYGVCVDDNHGLCVVTKFMDGGSVHDLISKNKKLQSKDIVRIAVDVAEGLEFMNDHGVPYRDLNTQRILLDKHGNASLGDMGIVTACKGVGEAMDYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVIWEMVTGEAAYSAFSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNNTPSKRPQFSEILAILLRSNNTNR. 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02614 583 Pfam Protein tyrosine and serine/threonine kinase 360 574 IPR001245 GO:0004672|GO:0006468
Seca6g02614 583 ProSiteProfiles Protein kinase domain profile. 325 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02614 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 202 575 - -
Seca6g02614 583 PRINTS Tyrosine kinase catalytic domain signature 396 409 IPR001245 GO:0004672|GO:0006468
Seca6g02614 583 PRINTS Tyrosine kinase catalytic domain signature 502 524 IPR001245 GO:0004672|GO:0006468
Seca6g02614 583 PRINTS Tyrosine kinase catalytic domain signature 546 568 IPR001245 GO:0004672|GO:0006468
Seca6g02614 583 PRINTS Tyrosine kinase catalytic domain signature 432 450 IPR001245 GO:0004672|GO:0006468
Seca6g02614 583 SUPERFAMILY Protein kinase-like (PK-like) 303 575 IPR011009 -
Seca6g02614 583 Gene3D Transferase(Phosphotransferase) domain 1 318 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02614 Seca-Chr6 89831938 89836405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02614 308 575 MAP Kinase Kinase Kinase AT2G17700 33.818 8.16e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Seca6g02614 PK_Tyr_Ser-Thr 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02614 - - gmx:100819097 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02614 6 89831938 89836405 Seca6g02614 6 89831938 89836405 ECH
Seca8g01521 8 26441952 26446277 Seca6g02614 6 89831938 89836405 PCT