Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02604 ATGGGGGGTAACTCACCTTGTGCTTCTTGCAAATTGTTGAGACGCCGATGCACACAAGAATGCATCTTTGCCCCTTATTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTCTTTGGTGCCAGCAATATCAGCAAGATGCTCCAGGAGCTTCCGGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCGGTTTATGGATGTGTAGGAGCAATATCATACCTTCAAAACCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTCTGTATCCAGATGCAGCAAGAGCCTACCTTACCCACACAGGTTGACCAAGATGACAAATCTCTGCTTCTATCTGACAATAATAATAATATTAACTATGAAATGCTTCCCCACTATCTCAACTTTCCTTCATCTTCTTCCTCATCTTCCAATGCATTCCAAGACTCTGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA 519 0.4374 MGGNSPCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEPTLPTQVDQDDKSLLLSDNNNNINYEMLPHYLNFPSSSSSSSNAFQDSEPLKRESFWT. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02604 172 Coils Coil 85 105 - -
Seca6g02604 172 MobiDBLite consensus disorder prediction 153 172 - -
Seca6g02604 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 141 - -
Seca6g02604 172 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Seca6g02604 172 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02604 Seca-Chr6 89641626 89642867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02604 3 172 AS2 family AT2G30130 68.783 1.09e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca6g02604 LOB 7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02604 - - gmx:100819419 275.404