Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02602 ATGGCAAACCGTGACCAAGCAGTTAACGGAAAACGCTCAACGCTTTCCCTTCACAAGACAGGTAACCTCGTCTTAACCGACGCAGGCCAGTTTAACGTTTGGTCCACAAACACTAACTCATTTAAGCCACTTGAGTTGTTTTTGTACGACACCGGGAATCTCGTTCTCCGAGAGCAGAACAACCATAGTTCTATTTTGTGGCAGAGCTTCGATTTCCCAACAGATACACTCCTTCCTGATCAAACTCTCACAAGGTTCACCAACCTTGTTTCCTCCAGAAGCCAGAGCAACTATTCCTCTGGTTTCTACAAGTTGTTCTTTGACAATGACAATGTTTTCCGTCTTCTCTACGAAGGCCCTCAAGTTTCAAGTGTTTACTGGCCAGATCCTTGGCTTGTGAGCAACAATGTTGGACAGGGTAATGGTAGAACCACTTACAACAGTAGCAGGGTTGCTTCACTAGACCGTTTGGGGAACTTCAAATCTTCAGATCATTTCACTTTAAGGACAACTGATTATGGGACAGTGCTCCAACGAAGGTTGACCATTGACCATGATGGTAACGTTCGTGTTTATAGCCGGAAAGATGGACATGAGATGTGGTATGTATCAGGGCTATTCAAATCACAATCTTGTTTCAGTCATGGGATTTGTGGACCCAATAGTCTTTGCAGATACGATCGCAGAATAGGTAGAAAGTGTTGGTGTATTGCAGGGTATAGCTGGGTTGATAAACGAGACTGGTCTCAAGGTTGCAAACCCAATTTCCCAATTTCATGCAACAACAATACTCAGTATCAATTCGTACCCTTGCCCCAAGCCGATTTTTATGGATATGACTATGGGTCTTCCTTTTCCAATTACACCTATAAACAATGTGTGAATCTGTGCTCGCAACTGTGCGAATGCTTGGGGTTCCAGTACACATTTGCGGTGGAGAATGGTCTTTTTTGGTGCTATCCAAAGACGAAGTTGCTGAATGGGCATAGTGCACTCGGTTTCCCGGCAACAATCTTCGTGAAACTGCCGAAAAGCATAGCTTTGGCCGATGAGAACCACATGGAAAATATTGTTTGTCCGAGAAACGCAGCAACACTGCTAGAAAGACCATATGTCAAAGGCAAAGAAAATGGATCGGTGAAATTCATGCTTTGGTTTGCGACTGGATTGGGAGGAGTTGAGGTCGTGTGCTTCCTTTTGGTGTGGTGTTTCTTATTCAAGAATACTAGCAAACACTTGGGTCCTGACAGAGAAGGCTATGTTCTTGCAGCAGCAACGGGATTCAGGAAATTCAGCTACTCTGAATTGAAACAAGCCACAAAAGGCTTCAGTCAAGAGATCGGAAGGGGTGCTGGAGGAACTGTGTATAAAGCTATGTTATCAGATAAAAGAGTAGCAGCAATAAAACGATTGTATGATGCGAACCAAGGAGAAAGTGAGTTCCTTGCTGAAGTAGGCATAATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGGTATTGTGCTGAAGGTAAGCACAGGTTGCTGGTGTATGAGTACATGGATAATGGTTCTTTAGCTCAGAATCTCTCATCAAATGCACTTGATTGGAGTAAGAGGTATAACATTGCTCTGGGAACTGCAAGGGGTTTGGCCTATTTACATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAAAACATACTTCTTGACTCTGATTACCAACCCAAGGTAGCAGATTTCGGCTTGTCTAAGCTACTAAATCGTAACAATCTCAACAATTCAAGCTTCTCAAGGATAAGAGGAACAAGGGGTTACATGGCACCAGAATGGCTTTACAACTTGCCAATCACTTCCAAGGTGGATGTTTATAGCTATGGGATTGTTCTCTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGTATTCAAATCAAGGATGGAACAGAGTCACTACACGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGGAGGAAAGGATCAGAAGGGGCATCTTGGGTGGAACAAATCGTTGACCCTGCTTTGGGATCAAATTATGACATGAAAAAATTGGAGATATTAGCAACATTGGCTTTGGAATGTGTACTGGAAGATAAAGATGAGAGGCCCAGCATGAGTCAAGTTGTTGAGAGACTTCAAAGTCTTGAACATGATTCTTGA 2178 0.4339 MANRDQAVNGKRSTLSLHKTGNLVLTDAGQFNVWSTNTNSFKPLELFLYDTGNLVLREQNNHSSILWQSFDFPTDTLLPDQTLTRFTNLVSSRSQSNYSSGFYKLFFDNDNVFRLLYEGPQVSSVYWPDPWLVSNNVGQGNGRTTYNSSRVASLDRLGNFKSSDHFTLRTTDYGTVLQRRLTIDHDGNVRVYSRKDGHEMWYVSGLFKSQSCFSHGICGPNSLCRYDRRIGRKCWCIAGYSWVDKRDWSQGCKPNFPISCNNNTQYQFVPLPQADFYGYDYGSSFSNYTYKQCVNLCSQLCECLGFQYTFAVENGLFWCYPKTKLLNGHSALGFPATIFVKLPKSIALADENHMENIVCPRNAATLLERPYVKGKENGSVKFMLWFATGLGGVEVVCFLLVWCFLFKNTSKHLGPDREGYVLAAATGFRKFSYSELKQATKGFSQEIGRGAGGTVYKAMLSDKRVAAIKRLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMDNGSLAQNLSSNALDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKLLNRNNLNNSSFSRIRGTRGYMAPEWLYNLPITSKVDVYSYGIVLLEMITGRSPTTGIQIKDGTESLHERLVTWVREKRRKGSEGASWVEQIVDPALGSNYDMKKLEILATLALECVLEDKDERPSMSQVVERLQSLEHDS. 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02602 725 PANTHER OS07G0415500 PROTEIN 1 722 - -
Seca6g02602 725 Pfam D-mannose binding lectin 2 85 IPR001480 -
Seca6g02602 725 PIRSF SRK 1 725 IPR024171 GO:0004674
Seca6g02602 725 Pfam Protein kinase domain 444 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02602 725 ProSiteProfiles Bulb-type lectin domain profile. 1 69 IPR001480 -
Seca6g02602 725 Gene3D Transferase(Phosphotransferase) domain 1 516 725 - -
Seca6g02602 725 Pfam S-locus glycoprotein domain 176 241 IPR000858 GO:0048544
Seca6g02602 725 Gene3D Phosphorylase Kinase; domain 1 409 515 - -
Seca6g02602 725 SMART serkin_6 441 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02602 725 Gene3D - 1 128 IPR036426 -
Seca6g02602 725 ProSiteProfiles Protein kinase domain profile. 441 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02602 725 CDD PAN_AP_plant 256 343 - -
Seca6g02602 725 SUPERFAMILY Protein kinase-like (PK-like) 425 719 IPR011009 -
Seca6g02602 725 FunFam S-receptor-like serine/threonine-protein kinase 410 515 - -
Seca6g02602 725 FunFam Serine/threonine-protein kinase 516 725 - -
Seca6g02602 725 ProSitePatterns Protein kinases ATP-binding region signature. 447 469 IPR017441 GO:0005524
Seca6g02602 725 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 130 IPR036426 -
Seca6g02602 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Seca6g02602 725 CDD STKc_IRAK 447 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02602 Seca-Chr6 89606655 89608832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02602 431 722 Trihelix Transcription Factor Family AT5G38560 44.147 4.12e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca6g02602 Pkinase 1.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02602 - - gmx:100806357 1126.31