LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g02601	ATGGCATCTTCAATCATATTCGCTCTTCTGCTTCTCCTTTTCCATTTTCAACATTCATCTTCGCTTCCCTTATCCGTGGAGAAACTCGATGAAGATATTATAGTCTCATCACCCAAAAACACATTCACAGCAGGATTTTATCCAGTAGGGGAAAATGCTTACACCTTCGCCGTATGGTTCACCCAATCTCATAAAATTCTCCAGAATGCCACTGTTGTTTGGATGGCAAACCGTGACCAGCCGGTTAACGGAAAACGGTCAACACTTTCACTTCTCAAAACAGGTAACCTCGTCCTAACCGATGCAGGTCAGTTCAACGTTTGGTCCACAAACACCGTCTCATTTAACCCACCTGAGTTGTTTTTGTATGACACCGGAAATCTCGTTCTCCGAGAGCAGAACAACCATAGTTCTGTTCTGTGGCAGAGCTTCGATTTCCCAACAGACACGCTCCTTCCTGATCAAACCCTCACAAGGTTCACCAACCTTGTTTCCTCCAAAAGCCAAAGCAACTATTCCTCTGGTTTCTACAAGATGTTCTTTGACATTGACAATGTTTTACGTCTTGTCTATGAAGGCACTCAAGTTTCAAGCGTTTACTGGCCAGATCCGTGGCTTGTGAGCAATAATTTTGGTACTAGTAATGGTAGATCCACTTACAATAGTAGCAGGGTTGCCACACTAGACCGTTTGGGGAAAGTTGTTTCTTCTGATCGTTTCACTATCAAAACAGCTGATTATGGGACGGTGCTTCAACGAAGACTGACTCTTGATCATGATGGTAATTGCCAATGCATGGGATTCCAGTACACATTTGATGTGAAAAGTGGTTATGCTTCGTGTTATCCAAAAACCATGTTGCTAAATGGGCATCGTTCACTGAGTTTCGTAGGAACATTCTACTTGCGGTTGCCAAAAAGCAGTGCTTTATCCAATGAGAACCCTGTGAAAAAGAATGACTTGGTTTGTCTGAGTAATGGAGTAACACAGCTAAAAAGATCATATGTCAAAGGCAAAGAAAATGGATCAGTGAAGTTCATGCTTTGGTTTGCGATTGGCGTGGGAGGAGTTGAGGCCGTGTGCTTCCTTTTGGTGTGGTGTTTCATATTTAAGAATACTAGGAAACACTTGGGTCCTGAAAGTGAAGGCTATGTTCTTGCAACAGCAACAGGATTCAGGAAATTCAGTTACTCTGAATTGAAACAAGCCACAAAAGGCTTCAGTCAAGAGATTGGAAGGGGTGGTGGAGGAATTGTATATAAAGCTATATTATCAGATAAACGAGTTGCAGCAATAAAGCAATTGTATGATGCAAACCAAGGAGAGAGTGAGTTCCTTGCTGAAGTAGGCATCATTGGAAGGCTTAACCACATGAATTTAATTGGCATGTGGGGGTATTGTGCAGAGGGAAAGCACAGGTTGTTGGTGTATGAGTACATGGAAAATGGTTCTTTAGCTCACAATCTCTCATCCAAAGCACTTGATTGGAGTAAGAGGTATAACATTGCTCTGGGAACTGCAAGGGGTCTAGCTTACTTACATGAAGAATGCCTGGAGTGGATTTTGCATTGTGATATAAAGCCTGAAAATTTACTTCTTGACTCTGATTATCAGCCTAAGGTTGCGGATTTTGGCTTGTCTAAGCTACTAAATCGGAACAACCTGGACAATTCTAACTTCTCAAGGATAAGAGGCACAAGGGGTTACATGGCTCCAGAATGGGTTTTCAACTTGCCAATTACTTCCAAGGTGGATGTTTTTAGCTATGGAATTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGCATTCAAATCACAGATGGAACAGAGGCACAAAACGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGGAGGAAAGGATCAAAGGGGGCATCTTGGGTGGAACAAATCGTTGACCCTGCTTTGGGATCAAATTATGACGTGAAGAAAATGGAGATATTGGCAACGGTGGCTTTGGAATGTGTATTGGAAGATAAAAATGAGAGACCCAGCATGAGTCAAGTTGTTGAGAGGCTCCAAAGTCATGATCATGATTCTTGA	2070	0.4251	MASSIIFALLLLLFHFQHSSSLPLSVEKLDEDIIVSSPKNTFTAGFYPVGENAYTFAVWFTQSHKILQNATVVWMANRDQPVNGKRSTLSLLKTGNLVLTDAGQFNVWSTNTVSFNPPELFLYDTGNLVLREQNNHSSVLWQSFDFPTDTLLPDQTLTRFTNLVSSKSQSNYSSGFYKMFFDIDNVLRLVYEGTQVSSVYWPDPWLVSNNFGTSNGRSTYNSSRVATLDRLGKVVSSDRFTIKTADYGTVLQRRLTLDHDGNCQCMGFQYTFDVKSGYASCYPKTMLLNGHRSLSFVGTFYLRLPKSSALSNENPVKKNDLVCLSNGVTQLKRSYVKGKENGSVKFMLWFAIGVGGVEAVCFLLVWCFIFKNTRKHLGPESEGYVLATATGFRKFSYSELKQATKGFSQEIGRGGGGIVYKAILSDKRVAAIKQLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLAHNLSSKALDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPENLLLDSDYQPKVADFGLSKLLNRNNLDNSNFSRIRGTRGYMAPEWVFNLPITSKVDVFSYGIVVLEMITGRSPTTGIQITDGTEAQNERLVTWVREKRRKGSKGASWVEQIVDPALGSNYDVKKMEILATVALECVLEDKNERPSMSQVVERLQSHDHDS.	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g02601	689	ProSitePatterns	Protein kinases ATP-binding region signature.	411	433	IPR017441	GO:0005524
	Seca6g02601	689	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	521	533	IPR008271	GO:0004672\|GO:0006468
	Seca6g02601	689	CDD	B_lectin	36	147	IPR001480	-
	Seca6g02601	689	Pfam	Protein kinase domain	408	680	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g02601	689	ProSiteProfiles	Bulb-type lectin domain profile.	20	143	IPR001480	-
	Seca6g02601	689	FunFam	S-receptor-like serine/threonine-protein kinase	373	479	-	-
	Seca6g02601	689	SMART	serkin_6	405	684	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g02601	689	SUPERFAMILY	alpha-D-mannose-specific plant lectins	71	202	IPR036426	-
	Seca6g02601	689	FunFam	Serine/threonine-protein kinase	480	689	-	-
	Seca6g02601	689	SMART	blect_4	26	147	IPR001480	-
	Seca6g02601	689	Gene3D	Transferase(Phosphotransferase) domain 1	480	689	-	-
	Seca6g02601	689	Pfam	D-mannose binding lectin	71	159	IPR001480	-
	Seca6g02601	689	ProSiteProfiles	Protein kinase domain profile.	405	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g02601	689	PANTHER	OS07G0415500 PROTEIN	262	684	-	-
	Seca6g02601	689	Gene3D	Phosphorylase Kinase; domain 1	371	479	-	-
	Seca6g02601	689	SUPERFAMILY	Protein kinase-like (PK-like)	386	683	IPR011009	-
	Seca6g02601	689	CDD	STKc_IRAK	411	683	-	-
	Seca6g02601	689	Gene3D	-	24	145	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g02601	Seca-Chr6	89549257	89551662	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g02601	395	684	Trihelix Transcription Factor Family	AT5G38560	42.905	7.30e-70	239

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Seca6g02601		Pkinase	2.5e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g02601	-		-	jre:108984953	801.971