Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02599 ATGTGGTCAGCATCTGTGCAATTCAAGTCACAACCTTGTTTTATTCATGGGATTTGTGGACCCAATAGTCTCTGCAGTAATCACCCAAGCACGGGTAGAAAGTGTTCGTGTATTCCAGGGCATAGCTTCAATGATGATCAAGATTGGTCTCAAGGTTGCAAACCGGATTTCAAACCTTCATGTAACAACAAGACAGGGTATAGCTTCCTATCCTTACCCTATGTTGATTTTTATGGATATGACTATCCTACACCTTTTGCAAATTACACCTATAAACAATGTGAGAATCAGTGCTTGCAATTGTGCCTATGCATGGGATTCCAGTACGCATTTTCGTGGAACGGTGGTTATTCTACGTGTTATCTGAAAACCAGGTTGCTAAATGGGCATCGTTCACTGAGTTTCGTAGGAACATTCTACTTGCGGTTGCCAAAAAGCAATGCTTTATCTGAGAACCCTGTGAAAAAGAATGACTTGGTTTGTCTGAGTAATGGAGTAACACAGCTAAAAAGATCATATGTCAAAGGCAAAGAAAATGGATCAGTGAAGTTCATGCTTTGGTTTGCGATTGGCGTGGGAGGAGTTGAGGCCGTGTGCTTCCTTTTGGTGTGGTGTTTCATATTTAAGAATACTAGGAAACACTTGGGTCCTGAAAGTGAAGGCTATGTTCTTGCAACAGCAACAGGATTCAGGAAATTCAGTTACTCTGAATTGAAACAAGCCACAAAAGGCTTCAGTCAAGAGATTGGAAGGGGTGGTGGAGGAATTGTATATAAAGCTATATTATCAGATAAACGAGTTGCAGCAATAAAGCAATTGTATGATGCAAACCAAGGAGAGAGTGAGTTCCTTGCTGAAGTAGGCATCATTGGAAGGCTTAACCACATGAATTTAATTGGCATGTGGGGGTATTGTGCAGAGGGAAAGCACAGGTTGTTGGTGTATGAGTACATGGAAAATGGTTCTTTAGCTCACAATCTCTCATCCAAAGCACTTGATTGGAGTAAGAGGTATAACATTGCTCTGGGAACTGCAAGGGGTCTAGCTTACTTACATGAAGAATGCCTGGAGTGGATTTTGCATTGTGATATAAAGCCTGAAAATTTACTTCTTGACTCTGATTATCAGCCTAAGGTTGCGGATTTTGGCTTGTCTAAGCTACTAAATCGGAACAACCTGGACAATTCTAACTTCTCAAGGATAAGAGGCACAAGGGGTTACATGGCTCCAGAATGGGTTTTCAACTTGCCAATTACTTCCAAGGTGGATGTTTTTAGCTATGGAATTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAACAGGCATTCAAATCACAGATGGAACAGAGGCACAAAACGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGGAGGAAAGGATCAAAGGGGGCATCTTGGGTGGAACAAATCGTTGACCCTGCTTTGGGATCAAATTATGACGTGAAGAAAATGGAGATATTGGCAACGGTGGCTTTGGAATGTGTATTGGAAGATAAAAATGAGAGACCCAGCATGAGTCAAGTTGTTGAGAGGCTCCAAAGTCATGATCATGATTCTTGA 1584 0.4179 MWSASVQFKSQPCFIHGICGPNSLCSNHPSTGRKCSCIPGHSFNDDQDWSQGCKPDFKPSCNNKTGYSFLSLPYVDFYGYDYPTPFANYTYKQCENQCLQLCLCMGFQYAFSWNGGYSTCYLKTRLLNGHRSLSFVGTFYLRLPKSNALSENPVKKNDLVCLSNGVTQLKRSYVKGKENGSVKFMLWFAIGVGGVEAVCFLLVWCFIFKNTRKHLGPESEGYVLATATGFRKFSYSELKQATKGFSQEIGRGGGGIVYKAILSDKRVAAIKQLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLAHNLSSKALDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPENLLLDSDYQPKVADFGLSKLLNRNNLDNSNFSRIRGTRGYMAPEWVFNLPITSKVDVFSYGIVVLEMITGRSPTTGIQITDGTEAQNERLVTWVREKRRKGSKGASWVEQIVDPALGSNYDVKKMEILATVALECVLEDKNERPSMSQVVERLQSHDHDS. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02599 527 ProSitePatterns Protein kinases ATP-binding region signature. 249 271 IPR017441 GO:0005524
Seca6g02599 527 SUPERFAMILY Protein kinase-like (PK-like) 224 521 IPR011009 -
Seca6g02599 527 Gene3D Phosphorylase Kinase; domain 1 209 317 - -
Seca6g02599 527 Gene3D Transferase(Phosphotransferase) domain 1 318 527 - -
Seca6g02599 527 Pfam Protein kinase domain 246 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02599 527 PANTHER OS07G0415500 PROTEIN 2 522 - -
Seca6g02599 527 SMART serkin_6 243 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02599 527 ProSiteProfiles PAN/Apple domain profile. 61 144 IPR003609 -
Seca6g02599 527 CDD STKc_IRAK 249 521 - -
Seca6g02599 527 CDD PAN_AP_plant 57 144 - -
Seca6g02599 527 ProSiteProfiles Protein kinase domain profile. 243 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02599 527 FunFam Serine/threonine-protein kinase 318 527 - -
Seca6g02599 527 FunFam S-receptor-like serine/threonine-protein kinase 211 317 - -
Seca6g02599 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02599 Seca-Chr6 89534364 89535947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02599 233 522 Trihelix Transcription Factor Family AT5G38560 42.905 9.71e-71 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca6g02599 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02599 - - gmx:100806357 778.089