Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02581 ATGACCACCTCCTTCTCTGACCTGCTTGATTCTCCCACCAACCACAACCTCGGAGGCTCAGAAAGGCCTCATGAGTTGTCGGATCCAACTGGGTCAGGTGTTCCCAAATTCAAGTCTGCACCTCCTCCATCTCTTCCTCTGTCTTCTATTTCTCATCCTACTCCTCCTCCAATTTCTCCTTCTTTCTTTGTTTTCCCTCCTGGCCTGAAACTTGCTGAGCTTCTTGACTCTCCTGTTCTCCTCAACTCTTCTAATAAAACTTTGTCATCTCCAACAACTGGAGCATTTGGCAATCAAGGCTTCAATCACCACAATGTTAAGGAAGAAGACAAAAGCTTCTCAACTTTCTCCTTCCAAACCCAATCACAGCCTTCTCTTTCATCCACAGCTGGATTTCAATCTTCAACAGGCATTGCTCAAACTGTAAGTGACCAATTACATCAACAGGGATGGAGTTTTCAGGAAACGGATAGGTTTTCTGGTAGAATGAACATGAGTGTGGTGAAAACTGAAGGCTCTTCTTCTATACAGAGTTTCACCCCTGAGAATGTTGCTAGTGCACAAAATAACTACAAGAGTGGTTTGCAATCTGATAACAACAATTACCACCCACAAATTCAGACCTTAAACAAAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAATGCACATACCCCAATTGCCCAACAAAGAAAAAAGTTGAGAAGTCTTTAGAAGGGCATGTTACTGAGATAGTTTACAAAGGTACTCATAACCATCCAAAGCCTCAGGCTACAAGGAGGAACTCATTGTCTGGATCATCACTTGCAATTCCTCCTTTAAATCATGTCAGCAATGAAATACCAGATGCCACTCATGGCAATGGACACATGGATTCGGTTGCCACACCTGATAACTCATCAATATCAATGGGAGATGATGATTTTGAGCAGAGTTCCCAAAAGAGTAAATCAGGAGAGGACTTTGATGAAGATGAACCTGGTGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGAATATCAGCAGCTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGAAATCGATATCCTAGATGATGGGTACAGATGGAGGAAATATGGGCAGAAAGTAGTAAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACAAACCCAGGATGTCCAGTGAGAAAGCATGTAGAGAGAGCCTCAAATGACTTAAAGGCAGTGATCACAACCTATGAAGGAAAGCACAATCATGATGTCCCTGTGCCACGTGGCAGTGGCTGCCAATCTGTTAACAGACCACTGCCAACCAATGCCACAAACAACACCATGAGTTCAGCCCCTGTGACTCAATACACTAACAATTCAGTCAACAATTCTCTTCAAAGTTTTAGACCACCAGAAGGGCAAGCACTCTTCACCCCTGAGATGCTGGAGAGCCCTGGAGGCTTTGGATTCCCAGGGTTTGGGAATCCAATGGAATCTTATATGAACATGATGAATCAGCAATCTGACAATAATGTGTTTTCCTCTAGAGCCAAAGAGGAGCCTGTAGATGACTCGTTTCTTGATTCTTTGCTATGCTAA 1647 0.4323 MTTSFSDLLDSPTNHNLGGSERPHELSDPTGSGVPKFKSAPPPSLPLSSISHPTPPPISPSFFVFPPGLKLAELLDSPVLLNSSNKTLSSPTTGAFGNQGFNHHNVKEEDKSFSTFSFQTQSQPSLSSTAGFQSSTGIAQTVSDQLHQQGWSFQETDRFSGRMNMSVVKTEGSSSIQSFTPENVASAQNNYKSGLQSDNNNYHPQIQTLNKRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKSLEGHVTEIVYKGTHNHPKPQATRRNSLSGSSLAIPPLNHVSNEIPDATHGNGHMDSVATPDNSSISMGDDDFEQSSQKSKSGEDFDEDEPGAKRWRIEGENEGISAAGSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASNDLKAVITTYEGKHNHDVPVPRGSGCQSVNRPLPTNATNNTMSSAPVTQYTNNSVNNSLQSFRPPEGQALFTPEMLESPGGFGFPGFGNPMESYMNMMNQQSDNNVFSSRAKEEPVDDSFLDSLLC. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02581 548 SMART WRKY_cls 213 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 SMART WRKY_cls 381 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 MobiDBLite consensus disorder prediction 308 325 - -
Seca6g02581 548 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g02581 548 SUPERFAMILY WRKY DNA-binding domain 212 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 SUPERFAMILY WRKY DNA-binding domain 373 441 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 MobiDBLite consensus disorder prediction 1 59 - -
Seca6g02581 548 MobiDBLite consensus disorder prediction 39 59 - -
Seca6g02581 548 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 469 IPR044810 GO:0003700
Seca6g02581 548 Gene3D WRKY domain 199 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 FunFam WRKY transcription factor 33 368 434 - -
Seca6g02581 548 MobiDBLite consensus disorder prediction 272 290 - -
Seca6g02581 548 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 Pfam WRKY DNA -binding domain 382 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 MobiDBLite consensus disorder prediction 326 348 - -
Seca6g02581 548 ProSiteProfiles WRKY domain profile. 376 441 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 ProSiteProfiles WRKY domain profile. 214 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 Gene3D WRKY domain 368 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g02581 548 MobiDBLite consensus disorder prediction 263 348 - -
Seca6g02581 548 FunFam WRKY transcription factor 203 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02581 Seca-Chr6 89208863 89211953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02581 1 547 WRKY Transcription Factor Family AT2G38470 42.681 1.28e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca6g02581 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02581 K13424 - gmx:100127385 704.901