LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g02554	ATGTCTTCTAATGTTCTTCAATGGCTAAGCCTTGTAGGCATCATTTGGCTCCAAGCCATAAGTGGCACAAACACCAATTTCCCTGCTTACTCTTCCCAGTTGAAGCAGCTTCTTTCCATTTCCCAAGTGCAGCTCAATAATCTTGCTTTTGCATCAGATGCAGGGAAACTTTTTGGTTGGTTCTCTGGCCTTGCTTCTATTTACTTACCCCTCTGGCTTGTCCTCATGATTGGTTCATCTCTTGGGTTAATCGGTTATGGGGTGCAGTATCTCTTCATAACCAACAAAATTTCTTCTCTGTCCTATTGGCATGTCTTCTTACTTACTTTCCTGGCTGGGAATAGCATTTGTTGGATTAACACAGTCTGCTATGTTGTCACTGTCAAAAACTTCTTATCTAATCACCAAGTTGCTGTGGGATTAGCAACTAGCTACCAAGGTTTAAGTGCAAAGATTTACACCAATATTGTTGATGCTGTTTCTCCAAAGAGTAAAGCTAGAACCTTTCTTTCCCTAAACTCTCTTTTACCTGCAATAATTGGCCTAATAGCAGCTCCTATAGCCAGAGAAATTGAAGTCACAAGTCCTAAGCACATGGGTGTTGGATTTGCTGTGATGTTTATTATTACAATTGTCACTGGAATATATGCTGTGATGAGCAGCTTGCAATTTGTCACAAACAAAGTATCCTCACTGAGTATCCTGATTGGTATTCTAGTGTCTCTTATCTTCCCTCTGTTACTTCCAGTTTCTATGAAGATGAAGGAAATAGTGGAATCATGGAACATAAACAGAGAAAGACTAAGAGTCTATCATTTTACAGTGGAGGAGAAACCTAATGTAGAGAGGACAGAAAATGAGGAGAAAGAGGGTAAAGATAGCAGAGATGTTGAAGGGGTTGGAGTGAAGTTAATGCTGAGAAGAATAAATTTCTGGTTATATTTCTTTGTTTATTTTTTTGGTGCCACAATTGGTTTAGTATTTCTTAACAACTTGGGACAAATAGCTGAATCCAGGGGTTGCTCTGGCACTTCATCTTTGGTGTCTTTGTCTTCATCTTTTGGGTTTTTTGGCCGTCTCATTCCATCTCTTTTGGACTACTTTTACAGGGGAAAGGATGCAATTTCAAGACCAGCTTCAATTGTGGCATTGATGGCCCCAACATCAGGTGCATTTTTCTTACTTCTTAACAAAACTGATTATGCCCTCTACATCAGCACTGTAGTGATTGGAGTGTGTACTGGAGCAATCAGTTCTACTGCTGTTTCCACAACAACTGAGCTATTTGGCACCAAGAATTTCTCTATGAACCATAATGTGGTTGTGGCCAACATTCCAATGGGATCCTTTCTGTTTGGCTACTCGGCTGCACTTATTTACCATAAGGAAGGGGGGCATGAACATGAGAAATGCATGGGCATGGAATGCTACAGAAACACTTTTATCATTTGGGGTTCCTTTTGTTTCCTTGGTACTTTTTTGGCTTTGATTTTACATTCAAGGACTCGCAAGTTTTACTCACATAAACAATAG	1533	0.3992	MSSNVLQWLSLVGIIWLQAISGTNTNFPAYSSQLKQLLSISQVQLNNLAFASDAGKLFGWFSGLASIYLPLWLVLMIGSSLGLIGYGVQYLFITNKISSLSYWHVFLLTFLAGNSICWINTVCYVVTVKNFLSNHQVAVGLATSYQGLSAKIYTNIVDAVSPKSKARTFLSLNSLLPAIIGLIAAPIAREIEVTSPKHMGVGFAVMFIITIVTGIYAVMSSLQFVTNKVSSLSILIGILVSLIFPLLLPVSMKMKEIVESWNINRERLRVYHFTVEEKPNVERTENEEKEGKDSRDVEGVGVKLMLRRINFWLYFFVYFFGATIGLVFLNNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLLDYFYRGKDAISRPASIVALMAPTSGAFFLLLNKTDYALYISTVVIGVCTGAISSTAVSTTTELFGTKNFSMNHNVVVANIPMGSFLFGYSAALIYHKEGGHEHEKCMGMECYRNTFIIWGSFCFLGTFLALILHSRTRKFYSHKQ.	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g02554	510	PANTHER	UNCHARACTERIZED NODULIN-LIKE PROTEIN	8	507	-	-
	Seca6g02554	510	SUPERFAMILY	MFS general substrate transporter	192	504	IPR036259	-
	Seca6g02554	510	Pfam	Nodulin-like	7	250	IPR010658	-
	Seca6g02554	510	Gene3D	MFS general substrate transporter like domains	191	502	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g02554	Seca-Chr6	88871890	88873504	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g02554	1	509	Nodulin-like Gene Family	AT2G30300	46.935	8.85e-144	421

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g02554	-		-	gmx:100800763	769.229