Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02541 ATGGAGATATCATTGTTAAAAATGCTTGTTAATAGCATATCCTCGTTTTTGCATTTATCATATTCTGGAAGCATGAACTCAGAACCAGTCTCGAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTGCTGAAGCCAATCATTGATGCGATTGTTAATTCAGAGTTAACTACTGATGAAGTGCTTAATAAGATGTTTGAAGAACTTGGGCATGTTATTGATGAATTAAAGGAGCATATTGAGAATTGGCACCCATTGTCTAGCAAAGTTTACTTTATAATGATATATGAACTTCTTAAAGAGGCAATAAGTGTGCAGTCATTGGATTGCTTGTTGATTCATATAGAAAAGTTTACTGCACAGATGTCGATGTTAATCTCATGGATACTTATTGATAGCCAGACATCAGTCCTTCCTAGAAGATTGCTGTTTACTTTGTCTCCGCCTTCGCGAGATGTGATTAGGTTAAAAGTGAGCAATGTGCAAATATCTTTGCTTGAGTTTGGTTTGCCACCTGATGTAGAAATAGAACATGTTATGCAAGTTGCACCCTTGATATATAGGATTCGGACTTCGGGGCTCAATATTTTCCCGCAGCTGAAGGTCTCTCAGCAATGTCCCCATGATGAATTGAGTTCTGAACATTTGGAGCACTGTGTTCAGAAACTTAAGCTTTTGGGACATGAAGAAACCTCATCAGTCATTAAAGAAGCTATTACAGAGCAACTTGAAGGTGTAGGACCCAGTTCTGAGGTCCTGGAAAAAATAGCTGATAGCCTCGGGCTAAGGTCTAATCAGGAGGTTCTGATTGAAGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGTGGAATACATTGATAAAATGATTGCTGTTGTTACACGTATGCATGAGCGTCTTCTTATGCTTAAGCAAGCCCAGAGTTGCAGCCCAGTTCCAGTGCCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCCTCAGGGCAAACCTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTCGGGCTTACTGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAACTGGCTGATCCTACAAAATCTGCAAATTTAAATCAACCATCTGCTCTTCATGGATATGTGGAGTCTGGTACAACCAGGGAATCCCCTGTTTTTCCTCATTCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGCTCGTTCCCGTTCTTTTAGTTCACCAGGTAATAACATAACTTCTGGTGGAATCCAGCGAGAGGGAACATCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGTTAATGGGCAATATATGGATCTTGCAAGAATGTCACCTGCAGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTATAGATTCAGTTGGTCAACCTTCAATTTCGCCATCTAGAAGGGAATCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATGTTAGAGCTGCATCTGATTCCAGTGCATTTTCTGGTGCAAATTTTCCCCAAGAAACACAAGGTGATGACAACAGTGCTCCCCAGCTGTCAACTAGTCCAGGCTACAGTAGAGATGCTTCTGGTGAATTAAATCCAGGACCAGATGCTGCTGGTGCTGCTGCCATGCCATCAATGCATAGAGAACCTGAGTTTCCACCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAGAGGCTTGTTCCTAGGATAGTGTCTTCTTCTGCTATTGAAACCAGGGCTGATCTTTCTGGTATTGAATCCCAGGTTCGGAATTTAGTTGAGGGCTTGAAGAGCTGTGATCTTGATACTCAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAGCTTATTAGTTGACTTACTTCAATCAACTGATGCAAAGATCCAGGAAAATGCTGTTACAGCACTTCTCAATTTATCAATTAATGATAACAATAAAAGTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTTCAGACTGGGAGCCCAGAAGCCAAGGAGAACTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTAACATAGGGAGGTCAGGGGCAATTAGACCACTCGTAGATTTATTAGGGAATGGAACCCCAAGAGGGAAGAAAGACGCTGCCACTGCTTTGTTTAATTTATCAATATATCATGAAAACAAGAACCGGATTGTGCAAGCTGGTGCTGTAAAGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTAGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCAGCAGCTCTTTTACATCTTTGCTTATATAGTAACAGATTTTTAAGCATGGTGCTCCAACAAGGAGCTGTCCCACCATTAGTAGCTTTATCTCAGTCAGGCACACCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAATCAGTTCAGAAGTCAAAGACACGGGAATGCTGGGAGGGGCTGA 2778 0.4298 MEISLLKMLVNSISSFLHLSYSGSMNSEPVSKYYQKAEEILKLLKPIIDAIVNSELTTDEVLNKMFEELGHVIDELKEHIENWHPLSSKVYFIMIYELLKEAISVQSLDCLLIHIEKFTAQMSMLISWILIDSQTSVLPRRLLFTLSPPSRDVIRLKVSNVQISLLEFGLPPDVEIEHVMQVAPLIYRIRTSGLNIFPQLKVSQQCPHDELSSEHLEHCVQKLKLLGHEETSSVIKEAITEQLEGVGPSSEVLEKIADSLGLRSNQEVLIEAVALEKLKENAEQTEKTAEVEYIDKMIAVVTRMHERLLMLKQAQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLADPTKSANLNQPSALHGYVESGTTRESPVFPHSRSNQPSSPESARSRSFSSPGNNITSGGIQREGTSPLHPRSTSEGSLSGMVNGQYMDLARMSPAGLDDRSASSDESSIDSVGQPSISPSRRESSSAFSSEQSQTHVRAASDSSAFSGANFPQETQGDDNSAPQLSTSPGYSRDASGELNPGPDAAGAAAMPSMHREPEFPPRLMEARSRSQAIWRRPSERLVPRIVSSSAIETRADLSGIESQVRNLVEGLKSCDLDTQREATAELRLLAKHNMDNRIAIANCGAISLLVDLLQSTDAKIQENAVTALLNLSINDNNKSAIANAGAIEPLIHVLQTGSPEAKENSAATLFSLSVIEENKINIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLYSNRFLSMVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG. 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02541 925 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 723 765 IPR000225 GO:0005515
Seca6g02541 925 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 764 806 IPR000225 GO:0005515
Seca6g02541 925 MobiDBLite consensus disorder prediction 418 478 - -
Seca6g02541 925 Pfam U-box domain 322 392 IPR003613 GO:0004842|GO:0016567
Seca6g02541 925 SMART arm_5 834 874 IPR000225 GO:0005515
Seca6g02541 925 SMART arm_5 753 793 IPR000225 GO:0005515
Seca6g02541 925 SMART arm_5 671 711 IPR000225 GO:0005515
Seca6g02541 925 SMART arm_5 794 833 IPR000225 GO:0005515
Seca6g02541 925 SMART arm_5 625 669 IPR000225 GO:0005515
Seca6g02541 925 SMART arm_5 712 752 IPR000225 GO:0005515
Seca6g02541 925 SUPERFAMILY ARM repeat 642 914 IPR016024 -
Seca6g02541 925 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 396 IPR013083 -
Seca6g02541 925 SUPERFAMILY RING/U-box 314 398 - -
Seca6g02541 925 CDD RING-Ubox_PUB 323 375 IPR045210 -
Seca6g02541 925 MobiDBLite consensus disorder prediction 497 571 - -
Seca6g02541 925 Pfam Armadillo/beta-catenin-like repeat 755 792 IPR000225 GO:0005515
Seca6g02541 925 Pfam Armadillo/beta-catenin-like repeat 673 710 IPR000225 GO:0005515
Seca6g02541 925 Pfam Armadillo/beta-catenin-like repeat 712 751 IPR000225 GO:0005515
Seca6g02541 925 SMART Ubox_2 325 388 IPR003613 GO:0004842|GO:0016567
Seca6g02541 925 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 805 846 IPR000225 GO:0005515
Seca6g02541 925 FunFam RING-type E3 ubiquitin transferase 321 396 - -
Seca6g02541 925 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 682 724 IPR000225 GO:0005515
Seca6g02541 925 Gene3D - 621 920 IPR011989 -
Seca6g02541 925 PANTHER U BOX DOMAIN-CONTAINING 29 914 - -
Seca6g02541 925 FunFam RING-type E3 ubiquitin transferase 625 920 - -
Seca6g02541 925 Coils Coil 265 295 - -
Seca6g02541 925 ProSiteProfiles U-box domain profile. 321 395 IPR003613 GO:0004842|GO:0016567
Seca6g02541 925 MobiDBLite consensus disorder prediction 492 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02541 Seca-Chr6 88716229 88724512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02541 282 925 U-box Gene Family AT2G23140 64.241 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02541 - - tpra:123913325 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01386 8 23093789 23099802 Seca6g02541 6 88716229 88724512 PCT