Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02538 ATGTGCCTTCTTGACTGCTGCTCTGTTTCTGAGATCCATGAGGTGATATGCTTGCTACTACTGCCCCATTTAATGCTTGACAAGAGTGGACCACAAATTTATAGCTCATTCATTAACTATCCCTTGATGCACAATTGGCACAAAAGTTTTTTTAGAGTGCCTGTTCTGCTAATACTCGATCTGGAGAATAAATCAAATATCTTAATGCGAAGATATGAATTAGGAAGACTACTAGGCCAGGGCACCTTCGGAAAGGTTTACTATGCAAGGAGTACAATAAATAACCAGAGTGTGGCTATCAAAGTGATTGACAAAGATAAGGTTATGAGAACTGGGCAAGCTGATCAAATCAAGCGTGAAATATCTGTTATGAGGCTGGCTAGACATCCCAATATTATACATCTTTTTGAGGTTATGGCCAACAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTTTTCAACAAGGTGGCTAAAGGAAAACTCAAAGAAGGTGTTGCTCACAAATATTTTAAGCAGCTAATCAATGCAGTAGATTTTTGTCACAGTAGAGGCGTGTACCACCGAGACATAAAGCCTGAGAACATTCTATTGGATGAAAATGGGAATTTAAAGGTCTCTGATTTTGGGTTAAGTGCTCTTGCTGAATCCAAGCGACAGGATGGCTTACTCCATACACCTTGTGGTACCCCTGCCTATGTTGCTCCTGAAGTAATCAAAAGGAAGGGATATGATGGTGCCAAAGCTGATATTTGGTCTTGTGGAATAGTTCTATTTGTCTTATTGGCAGGCTATCTCCCTTTTCATGACTCAAATTTGGTAGAGATGTATAGGAAGATAAGTAAAGCAGAATTGAAATACCCTAATTGGTTCCCACCAGAAGTATGCAAGCTGTTGGGCATGATGTTGGATCCAAATCCTGAAACTAGGATTTCCATAGCTATGGTTAGGGAAGATCGTTGGTTTAAGAAAGGACCTAATCCTAGAAATAAAAAACCTGTAGTGGAAAATAGCACTGTCTCTTCTTCAGGTACAATTCCTTCTGATAAAATTGATGAAAGTGATGGCCTAGCAGCAGAAGCAAAGGAAGAGTCGGTTGTGCCCGTAAGTATAAATGCCTTCGATATCATCTCCCTTTCTGCTGGTTTTGATCTTTCTAGATTCTTTGATGAGAGTTTTCAGAAAAGGGAAGCTAGATTTAGTTCAAAACTACCTGCATCAGTCATCATCTCCAAGCTGGAAGACATTGCTAGGCAACTGAGGATGAAAATAAAGAAAAAAGCTGCTGGTTTATTGAAATTAGAGGGCTTCAAGGAAGGTAGAAAAGGGGTTTTATCCATTGATGCAGAGATATTTGAGGTTACTCCTCTTTTCCATTTGGTGGAGGTGAAAAAGTCAAATGGAGATACATTGGAATATCAGAAAATATTGAAAGAGGATATAAGGCCTGCTCTTCAGGATATTGTTTGGGTCTGGCAAAGTGATCAACAACTGCAATCACAACAGTCAGAGCAACCTATACATGACCAACAGCAACAACAAACACAGTCATAA 1566 0.394 MCLLDCCSVSEIHEVICLLLLPHLMLDKSGPQIYSSFINYPLMHNWHKSFFRVPVLLILDLENKSNILMRRYELGRLLGQGTFGKVYYARSTINNQSVAIKVIDKDKVMRTGQADQIKREISVMRLARHPNIIHLFEVMANKSKIYFVMEYAKGGELFNKVAKGKLKEGVAHKYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALAESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLVEMYRKISKAELKYPNWFPPEVCKLLGMMLDPNPETRISIAMVREDRWFKKGPNPRNKKPVVENSTVSSSGTIPSDKIDESDGLAAEAKEESVVPVSINAFDIISLSAGFDLSRFFDESFQKREARFSSKLPASVIISKLEDIARQLRMKIKKKAAGLLKLEGFKEGRKGVLSIDAEIFEVTPLFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQQLQSQQSEQPIHDQQQQQTQS. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02538 521 Gene3D Transferase(Phosphotransferase) domain 1 62 374 - -
Seca6g02538 521 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 63 489 - -
Seca6g02538 521 FunFam Non-specific serine/threonine protein kinase 65 368 - -
Seca6g02538 521 FunFam Non-specific serine/threonine protein kinase 63 151 - -
Seca6g02538 521 MobiDBLite consensus disorder prediction 328 350 - -
Seca6g02538 521 CDD CIPK_C 376 490 - -
Seca6g02538 521 ProSiteProfiles Protein kinase domain profile. 72 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02538 521 Gene3D Kinase associated domain 1, KA1 375 495 - -
Seca6g02538 521 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Seca6g02538 521 ProSiteProfiles NAF domain profile. 370 394 IPR018451 GO:0007165
Seca6g02538 521 SUPERFAMILY Protein kinase-like (PK-like) 68 346 IPR011009 -
Seca6g02538 521 FunFam Non-specific serine/threonine protein kinase 370 494 - -
Seca6g02538 521 MobiDBLite consensus disorder prediction 336 350 - -
Seca6g02538 521 Pfam Protein kinase domain 72 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02538 521 Pfam NAF domain 372 430 IPR004041 GO:0007165
Seca6g02538 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Seca6g02538 521 SMART serkin_6 72 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02538 Seca-Chr6 88678249 88679944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02538 61 500 CBL-interacting serine-threonine protein kinases AT5G58380 67.257 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca6g02538 Pkinase 4.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02538 - - gmx:100790905 739.184