Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02536 ATGGCTTCTAGAAAGGTCGATAACCCTCACTCCGGCGATGGTGCCAGTCCTGGGAAAATCTTCATCGGAGGATTAGCCAAAGATACAAGCTTAGACACATTTTTGAAGTACTTCAAGAAGTATGGAGAGATTACAGACTCCGTTATCATGAAGGACCGACACACAGGTCGACCTAGGGGATTCGGGTTCGTCACTTATGCAGATCCTTCTGTCGTTGACGAAGTCATTCAGGAGAACCACATCATTAACGGCAAGCAGGTTGAGATCAAGAGGACTATTCCAAAGGGTTCATCACAAGCCAATGATTTCAAAACAAAAAAGATTTTTGTTGGTGGTATTCCAACAGCAGTAACTGAAGATGAGTTCAAGAACTTCTTCTCAACGTATGGGAAAGTCGTGGAACATGAGATAATACGTGATCACACCACAAAACGGTCCCGGGGATTTGGGTTTATAATTTTTGACAGTGAAAAGGTTGTTGATAATATGATGGCTGATGGGAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCATCTCTTCCTCCATTTGCTAGTGACTCTAGGGTACGTTCTTACAATGATGGTTTTGGTGGATTTGGTGATTCTTATGGAGGTTTTGCTAGTGGTGGTTATGGCCCTGCATCTTATAGGTCACTTGGAGGTTTTGGTGGTAGGCTTGGTGATTATGGTGGGTATGGAGTTGATGACTTTGGTGGTAGTTTTGGGGGTTATAGTGATGGTGGCTATGCAGGCTTTCGAGGAGAATCGTCGTTTGGCTACTCTAGCCGCTATGGATCCTACATGGGGGGTCTTGGCGGATATGGCGGCAGTGGGTTAGGAGCATATGGACGAGGTAGTGGAGGCTATGGAAGCTATGGTGGTCCAGGCACTGGTGCGGGTTATGAAGGCCCTGGTGCTGGTTATGGTGGGGCAGGAGCAGGTGGAGGGCTGTATGCTAGTAGGGGAAGTTATGGTGGAAATAGTCGTTACCACCCTTATGCAAGGTAG 1047 0.4642 MASRKVDNPHSGDGASPGKIFIGGLAKDTSLDTFLKYFKKYGEITDSVIMKDRHTGRPRGFGFVTYADPSVVDEVIQENHIINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVTEDEFKNFFSTYGKVVEHEIIRDHTTKRSRGFGFIIFDSEKVVDNMMADGNMIDMAGTQVEIKKAEPKKSSNSASLPPFASDSRVRSYNDGFGGFGDSYGGFASGGYGPASYRSLGGFGGRLGDYGGYGVDDFGGSFGGYSDGGYAGFRGESSFGYSSRYGSYMGGLGGYGGSGLGAYGRGSGGYGSYGGPGTGAGYEGPGAGYGGAGAGGGLYASRGSYGGNSRYHPYAR. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02536 348 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Seca6g02536 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Seca6g02536 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 348 - -
Seca6g02536 348 SUPERFAMILY RNA-binding domain, RBD 106 216 IPR035979 GO:0003676
Seca6g02536 348 Gene3D - 97 218 IPR012677 -
Seca6g02536 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Seca6g02536 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Seca6g02536 348 SMART rrm1_1 107 180 IPR000504 GO:0003723
Seca6g02536 348 SMART rrm1_1 19 90 IPR000504 GO:0003723
Seca6g02536 348 Gene3D - 18 96 IPR012677 -
Seca6g02536 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Seca6g02536 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Seca6g02536 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02536 Seca-Chr6 88669997 88673323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02536 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 25.238 4.45e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02536 K12741 - gmx:100801373 390.963