Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02531 ATGCCGGAGATCGAACATGCGGCGGAGGCAACCGCCCTGTTCGGTAAATACGAGCTGGGCAGGGTCCTTGGCTGCGGCGCATTCGCCAAAGTGTACTACGCGCGCAATGTGCAAACGGGTCAGAGCGTGGCTGTGAAAATCATCAACAAGAAGAAGCTCGCCGGAACGGGACTCGCCGGCAACGTGAAACGCGAGATTAGCATCATGAGCCGTCTCCACCACCCCCACATTGTTCGCCTCCACGAGGTTCTCGCAACGAAGACGAAAATCTTCTTCGTCATGGACTTCGTTCGCGGCGGTGAGCTCTTCGCGAAGATCTCAAAGGGTCGTTTCTCCGAGGATCTCAGCCGTCGATATTTCCACCAATTGATCTCCGCCGTCGGGTACTGCCATTCCCGCGGCGTTTTCCACCGCGATCTCAAACCGGAGAATCTCCTCCTCGACGAGAACGGCAACTTGAAAGTTACGGATTTCGGGTTGAGTGCTGTTAGGGATCAGATCCGACCCGACGGGTTGCTCCATACCCTTTGTGGCACCCCTGCTTACGTGGCACCAGAGATTCTCGCTAAGAAAGGCTATGATGGGGCTAAAGTCGATGTTTGGTCCTGCGGCGTCGTTTTATTCGTTCTCACTGCTGGGTACCTTCCTTTCAATGACCCGAATTTGATGGTCATGTACCGGAAGATCTACAAGGGTGAATTCCGGTGCCCCAGGTGGATGTCGCCGGAGCTCCGGCGGTTCCTGTCTAAGTTGCTCGACACTAACCCGGAAACCCGGATAACCGTCGACGGGATGACCCGGGACCCGTGGTTCAGGAAGGGGTACAAGGAGATAAAGTTTCACGAGGAGGATTATGGATCCGGGTCACGGCACGGGTACGGGTCGAAGGGTGATGGGTCGGAGGTGTTGGACTTGAACGCGTTTGATATCATTTCGTTTTCTGCGGGTTTGGATTTGTCCGGGTTGTTCGGGCAATCGAGCGATGGAGAGCGGTTGGTGGTGAGGGAGTCACCGGAGAAGATTCTGGAGGCGGCGGAGGAGCTGGGTGCGGCGGAGGGGATGGCGGTGAGGTGGAAGAAAGAATGTGGGGTGGAGCTGGAAGGGCTAAATGGGAATTTCGGAATTGGGATTGAGGTTTACCGGTTAACAGCGGAGCTGGCGGTGATTGAGGTTAAGAGGAGGTGTGGCGACGCCGTGGCCTTCAAGAATTTGTGGGACATCAAGCTCAGACCTCAACTTCTTAACGGTGGTGCAACGACGTCGCATCATCACGATCCTGACTCCTGA 1287 0.5579 MPEIEHAAEATALFGKYELGRVLGCGAFAKVYYARNVQTGQSVAVKIINKKKLAGTGLAGNVKREISIMSRLHHPHIVRLHEVLATKTKIFFVMDFVRGGELFAKISKGRFSEDLSRRYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVTDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVVLFVLTAGYLPFNDPNLMVMYRKIYKGEFRCPRWMSPELRRFLSKLLDTNPETRITVDGMTRDPWFRKGYKEIKFHEEDYGSGSRHGYGSKGDGSEVLDLNAFDIISFSAGLDLSGLFGQSSDGERLVVRESPEKILEAAEELGAAEGMAVRWKKECGVELEGLNGNFGIGIEVYRLTAELAVIEVKRRCGDAVAFKNLWDIKLRPQLLNGGATTSHHHDPDS. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02531 428 FunFam Non-specific serine/threonine protein kinase 7 296 - -
Seca6g02531 428 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02531 428 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02531 428 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02531 428 Pfam NAF domain 305 357 IPR004041 GO:0007165
Seca6g02531 428 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Seca6g02531 428 Gene3D Transferase(Phosphotransferase) domain 1 7 295 - -
Seca6g02531 428 Gene3D Kinase associated domain 1, KA1 301 415 - -
Seca6g02531 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 394 - -
Seca6g02531 428 CDD CIPK_C 306 413 - -
Seca6g02531 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Seca6g02531 428 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Seca6g02531 428 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Seca6g02531 428 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02531 Seca-Chr6 88609321 88610607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02531 1 421 CBL-interacting serine-threonine protein kinases AT2G30360 64.747 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca6g02531 Pkinase 3.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02531 - - gmx:100799169 711.835