Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02530 ATGGGTAACAACAGATTTAAATTATCAGATATGATACCAAATGCATGGTTTTACAAACTCAAACATATGAGCAGATCAAAGAAGCAAAATGGCTCTCATGTTATGAAGAACAAAGTAACCTCACCAACAACATCTCAAAGGTCGCAGGCAAGATACTCTCATTATATGTCCATTGAACCAAACAGAGCTGGTAAGTTATTCACCTCTCCTATTTACACCAAAAACACCCTATTCACTGATTCACCAAGAATGTCATCCAAGAGAAGAACCAGGAGAAAGACCATTTATAAGCCTTCTCCCACAATTGTCTCATCCCCAGTCATAGATAGTTGTAGCTGTCATTCCACAAATAATTGGAGTAGGCCAAATAAAACTCAGCCTCAGAACTATTATGTCTCCTCCATAGAGTGTTCTTCTGAATCAAACCTCAATGAATATGTTTCATCTGATTCTGAGTATGATAAGTTTACTGTTCCTGACTTGCATAATGGGCTAGCCTCTGAATGCAGTTGTAGAATAAGCTCTTCCACAAATGACATCATCATTGACATGAAAAATGAATCCTTCACTAGAAATTCTGAAAATCTTGATGGGTTTGACACAATTTCACAGTTAGGTCTTGCTCCAATATTAACCAAGCCAGTGAAGTTTGATGATAAGGTCATTGAAGCCACTGAGTTGAGAAGATCAACTAAATTGTATGAGCTAAAGGATCATCAGTCTTTCTCTGTCAAAATTAGCAAAGAGGAAAGAAGTAGAACAAAGAAAGATAGAAAAACCAGTCCAATAGCTAGAATATCCTCTGCTAATTCTACAGGCATAAGGCTTAGAGTTAATTCTCCAAAACTTGCAAGCAGGAAAGTTCAAGCCTATGCAAGAAGGAGTGTGTCATCTAGTGCATGCAAAGCCTCAACAAATAAAGATTTTCCAGAGGGCTTTGCAGTTGTTAAGTCCTCACTTGATCCACAAAAAGACTTCAGGGATTCAATGGTGGAGATGATTATGGAGAACAATATCCGAGCATCAAAAGATTTGGAGAACCTACTGGTCTGCTATCTTTCACTGAATTCAAGTGAATACCATGATCTCATTGTCAAAGCATTTGAGCAAATTTGGTATGACATGGCTCATCTCAAAATGTAA 1143 0.3762 MGNNRFKLSDMIPNAWFYKLKHMSRSKKQNGSHVMKNKVTSPTTSQRSQARYSHYMSIEPNRAGKLFTSPIYTKNTLFTDSPRMSSKRRTRRKTIYKPSPTIVSSPVIDSCSCHSTNNWSRPNKTQPQNYYVSSIECSSESNLNEYVSSDSEYDKFTVPDLHNGLASECSCRISSSTNDIIIDMKNESFTRNSENLDGFDTISQLGLAPILTKPVKFDDKVIEATELRRSTKLYELKDHQSFSVKISKEERSRTKKDRKTSPIARISSANSTGIRLRVNSPKLASRKVQAYARRSVSSSACKASTNKDFPEGFAVVKSSLDPQKDFRDSMVEMIMENNIRASKDLENLLVCYLSLNSSEYHDLIVKAFEQIWYDMAHLKM. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02530 380 ProSiteProfiles OVATE domain profile. 315 374 IPR006458 -
Seca6g02530 380 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 140 375 IPR038933 GO:0045892
Seca6g02530 380 MobiDBLite consensus disorder prediction 33 51 - -
Seca6g02530 380 Pfam Transcriptional repressor, ovate 319 375 IPR006458 -
Seca6g02530 380 MobiDBLite consensus disorder prediction 27 51 - -
Seca6g02530 380 Pfam DNA-binding domain 1 47 IPR025830 GO:0003677
Seca6g02530 380 NCBIfam uncharacterized plant-specific domain TIGR01568 313 375 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02530 Seca-Chr6 88602538 88603680 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca6g02530 Ovate 7.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02530 - - gmx:100798120 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01371 8 22856734 22857894 Seca6g02530 6 88602538 88603680 PCT