Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02527 ATGATCATAGAAGCTCAGAATCTTAGAATGGCACCCCAGGAATTTTCTATTGTCCTAGTGAATCTCATTGTTCTCTTTATTAACATGAATTTGCAAGGTGCCATTGCTGACTATGGCGGTTGGCAAAGTGCTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGGTATGGCAATTTGTATAGCCAGGGTTATGGAACTAACACAGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGCGGTTCTTGCTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAGCCTGGTTCTATTATTGTTACTGCTACAAACTTCTGTCCTCCAAACCCTTCTTTGCCTAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAACACTTTGATATGGCTGAACCAGCTTTCCTTCAAATTGCCCAATATAGGGCTGGAATTGTGCCTGTTGCCTTTAGAAGGGTGCCTTGTGTCAAAAAAGGAGGAATAAGGTTCACCATCAATGGCCACTCTTACTTCAACCTAGTTTTGATCACCAACGTGGCTGGTGCTGGGGATGTCCATTCAGTGTCCATCAAAGGGTCCAGAGCTGGATGGCAACCAATGTCAAGGAATTGGGGCCAAAACTGGCAAAGCAACTCTTACCTCAATGGACAAAGTCTCTCATTTCAAGTCACCACTAGTGATGGTAGAACTGTGACAAGCAACAATGTGGCACCAGCCAATTGGCAATTTGGTCAGACCTTCCAAGGTGCTCAATTTTAG 792 0.452 MIIEAQNLRMAPQEFSIVLVNLIVLFINMNLQGAIADYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHSVSIKGSRAGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSNNVAPANWQFGQTFQGAQF. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02527 263 PANTHER EXPANSIN-A15 24 263 IPR002963 GO:0009664
Seca6g02527 263 SMART dpbb_1 76 161 IPR007112 -
Seca6g02527 263 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Seca6g02527 263 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Seca6g02527 263 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Seca6g02527 263 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Seca6g02527 263 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Seca6g02527 263 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Seca6g02527 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Seca6g02527 263 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Seca6g02527 263 SUPERFAMILY Barwin-like endoglucanases 40 189 IPR036908 -
Seca6g02527 263 FunFam Expansin 171 263 - -
Seca6g02527 263 Gene3D - 171 263 IPR036749 -
Seca6g02527 263 Gene3D - 27 166 IPR036908 -
Seca6g02527 263 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Seca6g02527 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 171 IPR007112 -
Seca6g02527 263 PRINTS Expansin signature 98 109 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Seca6g02527 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Seca6g02527 263 CDD DPBB_EXPA_N 40 166 - -
Seca6g02527 263 Pfam Lytic transglycolase 76 160 IPR009009 -
Seca6g02527 263 FunFam Expansin 30 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02527 Seca-Chr6 88515387 88518192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02527 14 263 Expansin Gene Family AT2G40610 79.681 1.18e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02527 - K20628 gmx:100777044 490.345