Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02523 ATGACTAGAAAGAAGGTGGATCTTACATACATCACCAATGAGACTAAGAGGAAGATCGCATACAAGAAAAGAAAAAATGGTTTGATCAAGAAAATTGATGAGATCAGCACCCTGTGTGGGATTGAAGCATGTGCTGTAATCTACAGTCCTACTGATCCTCAGCCAGAGGTTTGGCCATCCCAATTGGGAGCCCAAATGGTGCTGTCCAAGTTCAGGAACATGCCTGAAATGGAACAGAGCAAAAAGATGCTGAATCAGGAGACTTTCTTGAACCAAAGGATCCAGAAAGCTCAGGAGCAGCTGACCAAACAGAAGAATGACAACAGGAGGAAAGAGATGACCAATCTCATGTTTCAATGCCTGAATGCTGGTCAGATTGCTGACGATGTTAGCATGAATGACATCAATGATCTCTCATGGTTGATTGATCACAGCATCAAGGAAATTGAAAGGAAGCTCAGTCAAGGTCAAGGTCAAGGTCAAGGTCAAGGCCAAGCACAAGATCAGGTGGTGGTTGAAAATAATGGAGAACAGATGGTGAATGGAGGAGATGATCAGCAGGTGGATTATGTCCCAATGGTGGATACTACTGATATGGATGCCATGCAACAGCAGCTCTGGGCTTTGAGCTTCATGAATGAGCTGCCATTTGGAGATGTTAATGTCCAAAATGGCTTTGGGGGACCTAATCCCCAACTCCCTTGA 705 0.444 MTRKKVDLTYITNETKRKIAYKKRKNGLIKKIDEISTLCGIEACAVIYSPTDPQPEVWPSQLGAQMVLSKFRNMPEMEQSKKMLNQETFLNQRIQKAQEQLTKQKNDNRRKEMTNLMFQCLNAGQIADDVSMNDINDLSWLIDHSIKEIERKLSQGQGQGQGQGQAQDQVVVENNGEQMVNGGDDQQVDYVPMVDTTDMDAMQQQLWALSFMNELPFGDVNVQNGFGGPNPQLP. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02523 234 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Seca6g02523 234 Coils Coil 80 114 - -
Seca6g02523 234 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Seca6g02523 234 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Seca6g02523 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca6g02523 234 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Seca6g02523 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Seca6g02523 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca6g02523 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca6g02523 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca6g02523 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca6g02523 234 PANTHER MADS BOX PROTEIN 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02523 Seca-Chr6 88431644 88432624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02523 1 176 Type I MADS-box Gene Family AT5G48670 49.432 2.59e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca6g02523 SRF-TF 4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02523 - - gmx:100816084 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02523 6 88431644 88432624 Seca6g02523 6 88431644 88432624 ECH