Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02520 ATGGAAAATCTAGACAGGGACATCTGCGGGTGGATCATGGAATTCCTGCTTCGGAGCTCCGCACCCGATTCCTTGGTCCAGAAAACCCTCACCGCTCTTCCACTCTCCGGCGCCGATTCCCGCCTCAAGAAAACCCTCCTCCTCCGCATCCTCCAATCCGAAATCCTCAGAGGCTCCCTCTCCGAAACCGCTCTCCAAATCCTCGAACTCCTCGATGAACTCGACCGAAACGACGCCGTTCCTGTCTCGGACTCCATGCGCCGCGCCTACTGTGCCGTTGCTGTCGAGTGCACCGTCAAGTACCTCATTAACTCCCCCGAAGAGCCCTCCGGCGAATACCTCTCCGCCGTCCGCCGGATCTGGCGCGGCCGAGTCGTCAAGCTTACGGCGGAGGGTCGACGGAGCGAGCTGGTCTCCGGCGAGTTGGAGCGGTGGAGGGACGACTTAGAGGCCGGGCTTTTGGACCCTAGGGTTTCCGAGAGGCTCGCGGGTTTGAACACCAGGTTGGACGCGGTGAACGAGTTGAAGGCATATCTGAAGGAAGCGTGGGAAATTATGGGACCTTCGTTTCTCGATTCGGTTGCGATGATGTCGAAGGCGAAGGCATTGCGCCCTGAAGGTGTCTATGAACTTGCACTACCGGTGAGGAAGAGTGATGAAAGGTCAGAAGATTCTGCGAAGGAGAAAAGGGACTCTGTTGGTGGTGATAGGAGTGAATCTTCCGATAGTGATGACGATAATGGTAATGATGATGGTGGCGCATGCTGCATGGTCATGGATAATGTGGCAGTGATGGCTAAAAATCAGGGCAAGGAACAAATGAAAGAGAGAATTGGTGCTTCTGTTGATACAAGTCAGAAAGTAGGACGCTGTGACTCTCCTGCAAAGGGAGATAAAGCAATTCAGAAAAGCAATCTTCAGCTCAGACGCAAGCACTCTGCACTTCGAGCATGCCATAGGGGAGTTAGAATCTCTGGTTCTGAGGAAGTGGAGCCAGAAAAATCGTGGAGTAAATATGATGATCCCTTGCCAAGTGCTGAAGCTGAAAAAGTTCGGAAGTCCCTTAAATCAAGTTCTTTGGAGTTACGAGCAATGGTCAAGGATCCTCTTCCTGATGCATTACATACGTCTGAAGTTGTAAGATCCAAATTGGCAACTAAAGATATAAATCTTGAGCCACCTATTGAAAACCGGAGTGGAGATGTAGATGTACCAGATCAAGATGTTTGCAAGAGCATTGTACTTTATCAGCCTAATGATGCCAATCTTGGGAAGAAGTCTCCTGTTAATTGTAGTAATGTTCATCACCCCAGCTTAATGAAACGGAAAAGTACTGCTCGTACTTGTGAGTGGGTTGATTCAATAGATAACTTGCCACGAGGGACACAGCCAAGAAGGAGGAAAAGGAAATGGAGTACATTGGAAGAGGAGAAACTAAGGGATGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCAACCATCCGAAATTTTTACAGTAACATATTTGAAAATAGAAGTGGAGTTGATCTAAAGGACAAGTGGAGAAACATGATACGGTGA 1560 0.4923 MENLDRDICGWIMEFLLRSSAPDSLVQKTLTALPLSGADSRLKKTLLLRILQSEILRGSLSETALQILELLDELDRNDAVPVSDSMRRAYCAVAVECTVKYLINSPEEPSGEYLSAVRRIWRGRVVKLTAEGRRSELVSGELERWRDDLEAGLLDPRVSERLAGLNTRLDAVNELKAYLKEAWEIMGPSFLDSVAMMSKAKALRPEGVYELALPVRKSDERSEDSAKEKRDSVGGDRSESSDSDDDNGNDDGGACCMVMDNVAVMAKNQGKEQMKERIGASVDTSQKVGRCDSPAKGDKAIQKSNLQLRRKHSALRACHRGVRISGSEEVEPEKSWSKYDDPLPSAEAEKVRKSLKSSSLELRAMVKDPLPDALHTSEVVRSKLATKDINLEPPIENRSGDVDVPDQDVCKSIVLYQPNDANLGKKSPVNCSNVHHPSLMKRKSTARTCEWVDSIDNLPRGTQPRRRKRKWSTLEEEKLRDGVKMFGEGNWATIRNFYSNIFENRSGVDLKDKWRNMIR. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02520 519 SMART sant 467 519 IPR001005 -
Seca6g02520 519 MobiDBLite consensus disorder prediction 269 298 - -
Seca6g02520 519 MobiDBLite consensus disorder prediction 216 242 - -
Seca6g02520 519 ProSiteProfiles Myb-like domain profile. 463 518 IPR001005 -
Seca6g02520 519 Pfam Myb-like DNA-binding domain 468 517 IPR001005 -
Seca6g02520 519 Gene3D - 461 519 - -
Seca6g02520 519 SUPERFAMILY Homeodomain-like 464 518 IPR009057 -
Seca6g02520 519 CDD SANT_TRF 469 519 - -
Seca6g02520 519 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 463 519 IPR017930 -
Seca6g02520 519 MobiDBLite consensus disorder prediction 216 254 - -
Seca6g02520 519 PANTHER MYB TRANSCRIPTION FACTOR 6 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02520 Seca-Chr6 88320996 88325584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02520 471 518 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 8.19e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g02520 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02520 - - aprc:113849788 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02520 6 88320996 88325584 Seca6g02520 6 88320996 88325584 ECH