Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02517 ATGGCCACACAGATGCAAGATCCACCTTCGAACCCTAACCCTAATCCCAATGCCGCAAATGCGACGCCCTCCTCTACCTTGTTCATCCGCGGCGGCGGGAATGGCGCTTCCCCCAATCCCGTCGCCGGTTCCGGCGCCGGAGAATCCCACTCTCACCACCGGAGGTCCCACTCGGAGGTCAGTTACCGGCTGCCGGACGATATGATGGATCTCTCGCCGTCGGATCCGTTGAATGGCGGATCCTCCACGGCGAGCCTGGAGGAGATCGGATCCGAGGACGACCTGTTCTCCACCTACATTGACGTGGAGAAGCTCGGTGGAGGCACGAACGGGTCCGGTCGAGGAGGAAACGGATCGGATCAGAGCGGTTATGGTAACGGCGCCGGAACGAGTGGCCACAACGATGGAGAGAAGAGTCCGAGCGCCGCCAGGCCGAGGCACAGGCACAGTAGCTCCGTCGACGGTTCAACGTCGACGAGCATGTTTGGGGAGATCATGGAGGCGAAGAAAGCCATGCCTCCTGATAAGCTTGCAGAGCTATGGACGATTGATCCAAAGCGTGCAAAGAGAATACTCGCAAATCGGCAATCTGCTGCACGTTCAAAAGAGAGAAAGGCCCGCTATATACAGGAACTTGAGCGCAAAGTTCAGACCCTTCAGACTGAAGCCACAACTCTTTCTGCCCAACTAACACTATACCAGAGGGACACAACTGGTTTGAGTACTGAAAATACCGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAGGCACAGCTTCGTGATGCTCTTAATGATGCGTTGATGAAGGAAGTTGAGAGGCTTAAGATTGCTACTGGGGAGGTAATGAACCACTCAGAGTCTTTTAATCTGGGATTACACCAGATGCCATTTGCAGGTGCAGGGTCAAATTTCTTTTCAATCCCACCACATTCTGGTCCTTCTGGTCACCAGAACATACAGTTGCCTCCATTTGGTCACTCCCCATCTAGTGTGCCAACTCATCAGCTGCAACAAACAAATTCTCACCAAATCTCAGACATATTGCAAAATGACCAGCTTGGTCGTTTGCAGGGACTTGACATTAGTAGCAAAGGATCAACCCTCGTGAAGTCTGAAGGCCCCTCAATATCTGCAAGTGAGAGTAGCACTACATTTTGA 1161 0.5297 MATQMQDPPSNPNPNPNAANATPSSTLFIRGGGNGASPNPVAGSGAGESHSHHRRSHSEVSYRLPDDMMDLSPSDPLNGGSSTASLEEIGSEDDLFSTYIDVEKLGGGTNGSGRGGNGSDQSGYGNGAGTSGHNDGEKSPSAARPRHRHSSSVDGSTSTSMFGEIMEAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNDALMKEVERLKIATGEVMNHSESFNLGLHQMPFAGAGSNFFSIPPHSGPSGHQNIQLPPFGHSPSSVPTHQLQQTNSHQISDILQNDQLGRLQGLDISSKGSTLVKSEGPSISASESSTTF. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02517 386 Pfam bZIP transcription factor 186 241 IPR004827 GO:0003700|GO:0006355
Seca6g02517 386 MobiDBLite consensus disorder prediction 366 386 - -
Seca6g02517 386 FunFam probable transcription factor PosF21 185 238 - -
Seca6g02517 386 Coils Coil 202 229 - -
Seca6g02517 386 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 247 IPR004827 GO:0003700|GO:0006355
Seca6g02517 386 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 363 - -
Seca6g02517 386 MobiDBLite consensus disorder prediction 112 137 - -
Seca6g02517 386 Gene3D - 185 238 - -
Seca6g02517 386 MobiDBLite consensus disorder prediction 1 159 - -
Seca6g02517 386 MobiDBLite consensus disorder prediction 17 32 - -
Seca6g02517 386 CDD bZIP_plant_RF2 187 236 IPR044759 GO:0003700|GO:0006355
Seca6g02517 386 SMART brlzneu 182 246 IPR004827 GO:0003700|GO:0006355
Seca6g02517 386 MobiDBLite consensus disorder prediction 48 64 - -
Seca6g02517 386 MobiDBLite consensus disorder prediction 309 342 - -
Seca6g02517 386 SUPERFAMILY Leucine zipper domain 186 237 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02517 Seca-Chr6 88295988 88299585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02517 5 386 bZIP Transcription Factor Family AT2G40620 49.757 2.33e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca6g02517 bZIP_1 7.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02517 - - gmx:100775607 564.688