Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02516 ATGAACGACACATATGTCACCAAGAAAATCCAACGGATGGTAAGGTTTATCCGCCAGGAAACAGAGGAGAAAGCCAACGAGATCTTTGTCTCCATTAAAGAAAAATTCAAGATCGAGAAGTTGGAGTTGGTTGAAGCCGACAAGAAGAAGATTCGCCAAGAGTACAAGCACAAAAAGAAGCAAGTTGAAATTCGGAAGAAGATTGAGTACTCTATGCAGTTGAATGCTTCTCGGATAGAAGTTCTTCAAGCTCAAGATGATGTGGTGAATAAAATGAAAGAAGATGCATTTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGGCTTTGGGGAGCTAGGACTTCTTTCTCCGATTTTTGTGAATTTCTAGAGATCATTGTTGACAACAAAGTTCATTTTCCACTTGCCCCTAGCCATCATAATTTCTATGATACCTGCTTCAAGACTCTCAATGATGAAATGCCTCTAAAGGTCTCAATGACTGGAAAGGACTTGTATGTGCAGAAACTATTCGCTAAAATGCCTCAAAGTGATGTAGTTAATTTCAATTCATTTTCTTAG 564 0.3901 MNDTYVTKKIQRMVRFIRQETEEKANEIFVSIKEKFKIEKLELVEADKKKIRQEYKHKKKQVEIRKKIEYSMQLNASRIEVLQAQDDVVNKMKEDAFEPRNMGYMVRLGLWGARTSFSDFCEFLEIIVDNKVHFPLAPSHHNFYDTCFKTLNDEMPLKVSMTGKDLYVQKLFAKMPQSDVVNFNSFS. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02516 187 Gene3D - 1 62 - -
Seca6g02516 187 Pfam P-loop containing NTP hydrolase pore-1 95 133 IPR039187 -
Seca6g02516 187 Pfam ATP synthase (E/31 kDa) subunit 16 96 IPR002842 GO:0033178|GO:0046961|GO:1902600
Seca6g02516 187 Coils Coil 41 61 - -
Seca6g02516 187 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 96 IPR002842 GO:0033178|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02516 Seca-Chr6 88253937 88254500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02516 1 96 Primary Pumps ATPases(2) AT1G64200 72.917 3.36e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02516 K02150 - twl:120016459 151.369