Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02504 ATGTGCTTTAGATCTGCCTTTGAGAGTTCAGTTTTCTGTAATAAATTCCACCATCAAGAAACTGGTTGGAGGGAGTGTAAATTTTGCAACAAGCTTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCTGCCTAGTATGATGAGGAATACTGAAAATCCTAGTGGGTCTCTTTCATTGACCCAAGCTAATGCAAGTGATCGACATTCTGCTCATTTTGATGGCAGACTGTTTGCGGGTAGTGTTGATGAAGGAAAACTTATGCAATTGTGTAGAGTTGTTGAAGCTAGTGAATCCAGCCGTTGGAATCAAGCTCAGAGAGATGGCAAAACTACATGTAGTGGGAAAACCAGCCAAGAAGTTAAGTGTTCATTCAGGGATGTGGATACTGGATTTTCAAATATTATGAAACCATCTGTTCAGTCATTGACATTTGCTACATTAGAAAATAATAGATCAAAATGGGAGATTAAAAACATACATGAGTCAACTGCACAGCCATCTTTGAGTATGTATTTGGGAAACCCATCAAAGAACAAATCTGTCCCGCCTTCTGCTGGAGAGAATGTAGAAGGGCGACTTGAGACCAAACCATCTCCTCCCTTTCAACAAGGGCAAAGATCACGCCCTATATTGCCCAAACTAGTAAAGACTGGGCTTACAATGAATGTGGAAACTGATAAAGGCACAACTTCTCAATCACGTATTGCCCGGCCACCTGCTGAAGGGAAGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAGGAGCTGGAGCGATTGTCCGGGGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTTCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCACATCTCACAATCTGAAGGCCTTCCTTTGCGGATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGCGTGACCCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGTGGAAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTACAGATACACAGGATGCCTCTACATCTGCACAGTCTAATGGCATTTCAGCCAAGGGATCCACCTTTTCTGGTGGAACTGAGAATCTGCCATCAGGAAGTAATTATGCCGATCTTCTCCATTCGATGAAAGGAAATGGGGAATCTCACTTAAATGGACATCCACAACATCTGCATTTGGGTACTGGAGCAGCTGGTTTGCTTAAAACTGAAAATGGTGAGGTGAAAAACAATCATTCACTGCAGAAACAAATTTCAGTTTTAGAAAAGAAGAGGACTCGCAATATTGGATCTAAAAGTAAAAGGTTGCTTATTGCTAATGAAGATGCTATGGAGTTGAAACTTACATGGGAAGAGGCACAGGATTTGCTTCGCCCACCGCCTAGCGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGAATTTGAAGAATATGAAGAACCCCCAGTTTTTGGAAAGAGAACAATATTCAGCACCTGTTCGACTGGGGGGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGCTGCCTGTTGACGCTCTTCTTCCGCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCATGTTCTGCACCAGAGGAGCTGAGTTCAAGGGAATTGGAAAATCTTCTGAAAACCAACAAAGATTTTAAGAAGCGGCGAATTGTTGAAAATGGCAAGTCAATCCAAGAGCACGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTGTTGATCCTGTTGAATCATCAGCTGGAGCCACCACCAAACATCCTCGACACCGTCCTGGCTGCTCCTGTATTGTGTGCATTCAGCCACCAAGTGGAAAGGGAAGACATAAGCCAACATGTACATGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTGATGCTACGGAAGAAGAAACGCCAATCAGAACGTGAAGCAGATGCTGCTGCCCAGAATGATCATATTCACCAAAAAGATGAGTCAGATACCAATGGAGCATCAAGAGATGATACAAGTCATTTAGAGAAAGAGGGAGGTCAAAATAGAGGTCAACCTGAGGTGGGTGAGTCCACTGCTGGACAGATAGATCTGAATAGTCATCCCAACCGTGAAGACATGCAAATGGATCAACTTGAAACAAGTGAATATATGAATGAAAATGGCCTAACAAACTTTAATAGTGAAGTGCAGCCTGCTCAGCATTCTTCTTTGCTCACTCAATCTAATGGAGAAGGTCAGAGATACTTCTCTGATGAAAGATACTTTGCATCTCATGTTTGGAACCAAGAAAGAAGAGATGAGGTATACAGTCATCCCAATCAAAGTCAAAACAATCTTTCTTAA 2574 0.4301 MCFRSAFESSVFCNKFHHQETGWRECKFCNKLIHCGCIVSRSLFEYLDFGGIGCVSCVNTSLPSMMRNTENPSGSLSLTQANASDRHSAHFDGRLFAGSVDEGKLMQLCRVVEASESSRWNQAQRDGKTTCSGKTSQEVKCSFRDVDTGFSNIMKPSVQSLTFATLENNRSKWEIKNIHESTAQPSLSMYLGNPSKNKSVPPSAGENVEGRLETKPSPPFQQGQRSRPILPKLVKTGLTMNVETDKGTTSQSRIARPPAEGKGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNGISAKGSTFSGGTENLPSGSNYADLLHSMKGNGESHLNGHPQHLHLGTGAAGLLKTENGEVKNNHSLQKQISVLEKKRTRNIGSKSKRLLIANEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQEFEEYEEPPVFGKRTIFSTCSTGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSAPEELSSRELENLLKTNKDFKKRRIVENGKSIQEHEPSGLDALASAAVLGENLVDPVESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAQNDHIHQKDESDTNGASRDDTSHLEKEGGQNRGQPEVGESTAGQIDLNSHPNREDMQMDQLETSEYMNENGLTNFNSEVQPAQHSSLLTQSNGEGQRYFSDERYFASHVWNQERRDEVYSHPNQSQNNLS. 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02504 857 MobiDBLite consensus disorder prediction 186 202 - -
Seca6g02504 857 SUPERFAMILY DNA-binding pseudobarrel domain 293 395 IPR015300 -
Seca6g02504 857 MobiDBLite consensus disorder prediction 397 427 - -
Seca6g02504 857 Gene3D - 273 400 IPR015300 -
Seca6g02504 857 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 799 - -
Seca6g02504 857 SMART B3_2 295 396 IPR003340 GO:0003677
Seca6g02504 857 MobiDBLite consensus disorder prediction 715 759 - -
Seca6g02504 857 MobiDBLite consensus disorder prediction 245 266 - -
Seca6g02504 857 FunFam B3 domain-containing transcription repressor VAL1 273 400 - -
Seca6g02504 857 MobiDBLite consensus disorder prediction 186 225 - -
Seca6g02504 857 Gene3D - 562 617 - -
Seca6g02504 857 Pfam B3 DNA binding domain 295 394 IPR003340 GO:0003677
Seca6g02504 857 ProSiteProfiles Zinc finger CW-type profile. 559 609 IPR011124 GO:0008270
Seca6g02504 857 ProSiteProfiles B3 DNA-binding domain profile. 295 396 IPR003340 GO:0003677
Seca6g02504 857 MobiDBLite consensus disorder prediction 712 780 - -
Seca6g02504 857 CDD B3_DNA 293 394 IPR003340 GO:0003677
Seca6g02504 857 Pfam CW-type Zinc Finger 564 606 IPR011124 GO:0008270
Seca6g02504 857 MobiDBLite consensus disorder prediction 761 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02504 Seca-Chr6 88106115 88113748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02504 1 830 B3 DNA Binding Superfamily AT2G30470 48.206 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca6g02504 B3 2.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02504 K09287 - gmx:100789848 1373.61