Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02500 ATGTCGTATGTACCTCCACACCTGAGAAATGCGAGCTCAACCACCGTGGCTACCACCACCAGAGCCTCATCCGTAACCCTAGATAATCCCAACCACCATAACACCAAGCTCGCATTCCCTTCCTCAAACTCTCACTTCAACAACAACAACAAAACCCCTCAACCTCCATCTCTCTCCTCATTCTCCAATGCCTCTCGCCGGAGCTCCGTCGCTCCCCCGTCGCACCGGATTCTCGCCGTCCCTGACCCCGTCTCCCCTCACTGGCAACCCTCCGAACGCGTTTCCCGCATGAGCCCTGACCAGATTGAAGAGGTTCGCTCACGGCTTAATCTTGATGTTACTGTTGCATCTGACTCTCCTGCTGCACCTGCACCTATAGAATCGTTCACTGATATGTGTTTGCACCCAAGTATCTTGAAGGATATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCTGTTGCTCTTAGTGGGAGGGATCTATTGGGTTGTGCTGAAACTGGTAGCGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGACGTGGTGATGATCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAGATAGCAGTTGCCACCCCTGGAAGATTTATTGACCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAAATAAGAGAGATAATGAGAAATCTTCCTGAGAAGCATCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCTAGGCCTGTGCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACAACAAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTAGGCTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGCCATCCATTTCCATTAACAATTGTGTTTGTTGAAAGAAAGACAAGTTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGAAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAGCATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCCTAGCTACTTCTTTTTACACTGATCGAGACATGTTCCTTGTGGCGAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGAAACACTGTGTCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAGGCAGCAGCTGCACAAAAAGAGGCAAAAATTACTTCATCCAGTCACTTTGGATTGGGAGCTGCTTCAATTAACATTGAAGATAAGTATAAATTTATGATTACTGCTTCGAACATTAAAGGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTAA 1722 0.4599 MSYVPPHLRNASSTTVATTTRASSVTLDNPNHHNTKLAFPSSNSHFNNNNKTPQPPSLSSFSNASRRSSVAPPSHRILAVPDPVSPHWQPSERVSRMSPDQIEEVRSRLNLDVTVASDSPAAPAPIESFTDMCLHPSILKDIAYHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDDPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREIMRNLPEKHQTLLFSATMPVEIEALAKEYLARPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLGLLVEEASQAEKCGHPFPLTIVFVERKTSCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTVSFATGKVARRKEKEAAAAQKEAKITSSSHFGLGAASINIEDKYKFMITASNIKGEGAADSAWDD. 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02500 573 Gene3D - 87 339 IPR027417 -
Seca6g02500 573 Gene3D - 341 535 IPR027417 -
Seca6g02500 573 Pfam DEAD/DEAH box helicase 151 322 IPR011545 GO:0003676|GO:0005524
Seca6g02500 573 SMART helicmild6 395 476 IPR001650 -
Seca6g02500 573 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Seca6g02500 573 CDD SF2_C_DEAD 347 485 - -
Seca6g02500 573 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Seca6g02500 573 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 517 IPR001650 -
Seca6g02500 573 SMART ultradead3 146 350 IPR014001 -
Seca6g02500 573 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 103 528 - -
Seca6g02500 573 MobiDBLite consensus disorder prediction 1 100 - -
Seca6g02500 573 MobiDBLite consensus disorder prediction 1 70 - -
Seca6g02500 573 CDD DEADc 138 336 - -
Seca6g02500 573 Pfam Helicase conserved C-terminal domain 378 476 IPR001650 -
Seca6g02500 573 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 335 IPR014001 -
Seca6g02500 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 496 IPR027417 -
Seca6g02500 573 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02500 Seca-Chr6 88042805 88051431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02500 127 498 Eukaryotic Initiation Factors Gene Family AT1G72730 36.267 8.93e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02500 K12823 - gmx:100787545 937.176