Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02498 ATGGCAGATGAAGCACAAAATGAGCTGAAGGAGGAGGTTGCCGAAATCGCCCCATTTGATCCTACCAAGAAGAAGAAGAAGAAGAAAATCACAATTGTAGATCCTGCTGATGATTCAGTGGACAAGTTGGCTGAGAAGACAGAAAATCTGTCAGTTGCAGTTTCTGAGGGGGCTGAGAGTACATTTACTGGTTTAAAAAAGAAGAAGAAGAAGCATGTTGAAATCAGTAACTTAAATGATGAGAGTGGAGATGCAATTGAGGATTTGGATGATCATGCTGAAGAAGATGGAGAAGATGCCATTTCCTTGCAACCTCGTTATCCTTGGGAAGGAAGTGACCGTGATTATAAATACGCGGAGCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGCATAATCCAGAACTTGCTGGAGACCGGCGGAGGACTGTTATGAGGCCTCCACAAGTTCTACGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAACTTGGTACAAGTGGCTCTCTTGATGGACAGCAGAGATTGGTTGTGAAGGGAAGATTTGCCCCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAGTATGTCATTTGCCTCGGATGCAAAAGTCCTGACACAATCCTTACTAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGCGTTGGCCGTAGGAGTGCAGGGACATGA 813 0.4453 MADEAQNELKEEVAEIAPFDPTKKKKKKKITIVDPADDSVDKLAEKTENLSVAVSEGAESTFTGLKKKKKKHVEISNLNDESGDAIEDLDDHAEEDGEDAISLQPRYPWEGSDRDYKYAELLGRVFNILREHNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILTKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRSAGT. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02498 270 Pfam Domain found in IF2B/IF5 139 248 IPR002735 GO:0003743|GO:0006413
Seca6g02498 270 Gene3D - 113 255 - -
Seca6g02498 270 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g02498 270 SMART eIF2Bneu4 140 249 IPR002735 GO:0003743|GO:0006413
Seca6g02498 270 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 115 222 IPR016189 GO:0003743|GO:0006413
Seca6g02498 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 119 269 IPR045196 GO:0003743|GO:0006413
Seca6g02498 270 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g02498 270 FunFam Eukaryotic translation initiation factor 2 subunit 113 255 - -
Seca6g02498 270 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 254 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02498 Seca-Chr6 88033139 88036779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02498 1 266 Eukaryotic Initiation Factors Gene Family AT5G20920 76.384 4.53e-139 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02498 K03238 - gmx:100783618 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02498 6 88033139 88036779 Seca6g02498 6 88033139 88036779 ECH