Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca6g02494 | ATGTCCGTACAATCGACTCTGAAGCTCCAGCATCTGAAGCAAACAACTGCAAGCTCCCATTTTGAAGGTGACCCACCATGCAAAACCACCGTGAGAACCCAACAGCACCAGAGGAAGCTCCTCCGGATCATACTCACCGATCACGACGCCACTGACTCTGACTCTTCCGGCGACGATGAAGAGCCACAAAACCCATCAAGGCTTCGAAGAGTGAAGAGGGAAATCACCCATGTCAACATGCATCTTCCTTTCGTCTCAGATTCTCCAACAACAACCTTTTCACCTTCTTCTTCATTTTCCTCCCTCCCTGACCCGACCCGTTTCAAGAGACCCAAGAAATCCTCCACCACCGCCGGTGCTTCTCGCCGCCGTGGCGGCAAGTTCAGGGGAGTTCGCCAGAGACCTTGGGGCCGCTGGACAGCGGAGATCCGAGACCCGACCCGCCGGAAACGGCTCTGGCTCGGGACCTTCGACACGGCGGAGGAAGCCGCCGCCGTTTACGATGAGGCTGCCGTGAAGCTTAAAGGCCCCAACGCCGTCACAAACTTCCCACACCGCGCCACTGCTAAGGCAGAGGAGGAGATGGCGGCGGAAGTTTTCTCCGGCGACGGTTTTGCGTCGCCGACGTCCGTCCTGGACTGTTACGAGCCGTTCGACGGTTTTCGTTACGGCGCGGTGGATGCCTTCGGGTTCGATATAGACGTGCCGTTAAGTCTGACGGACGTTAACTTTGTGCTAACGAGTCAGCGGTCAGGGAAGGAAGAGTTTGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCCAGTTAA | 810 | 0.5691 | MSVQSTLKLQHLKQTTASSHFEGDPPCKTTVRTQQHQRKLLRIILTDHDATDSDSSGDDEEPQNPSRLRRVKREITHVNMHLPFVSDSPTTTFSPSSSFSSLPDPTRFKRPKKSSTTAGASRRRGGKFRGVRQRPWGRWTAEIRDPTRRKRLWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPHRATAKAEEEMAAEVFSGDGFASPTSVLDCYEPFDGFRYGAVDAFGFDIDVPLSLTDVNFVLTSQRSGKEEFGEFDPDEFLTWPS. | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca6g02494 | 269 | ProSiteProfiles | AP2/ERF domain profile. | 127 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Seca6g02494 | 269 | PIRSF | PTI6 | 7 | 269 | IPR017392 | GO:0003700 | |
Seca6g02494 | 269 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 38 | 194 | - | - | |
Seca6g02494 | 269 | MobiDBLite | consensus disorder prediction | 47 | 67 | - | - | |
Seca6g02494 | 269 | Gene3D | AP2/ERF domain | 126 | 186 | IPR036955 | GO:0003700|GO:0006355 | |
Seca6g02494 | 269 | MobiDBLite | consensus disorder prediction | 82 | 130 | - | - | |
Seca6g02494 | 269 | Pfam | AP2 domain | 127 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Seca6g02494 | 269 | PRINTS | Ethylene responsive element binding protein signature | 128 | 139 | IPR001471 | GO:0003700|GO:0006355 | |
Seca6g02494 | 269 | PRINTS | Ethylene responsive element binding protein signature | 150 | 166 | IPR001471 | GO:0003700|GO:0006355 | |
Seca6g02494 | 269 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
Seca6g02494 | 269 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Seca6g02494 | 269 | SUPERFAMILY | DNA-binding domain | 127 | 185 | IPR016177 | GO:0003677 | |
Seca6g02494 | 269 | SMART | rav1_2 | 127 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Seca6g02494 | 269 | CDD | AP2 | 127 | 185 | IPR001471 | GO:0003700|GO:0006355 | |
Seca6g02494 | 269 | FunFam | Ethylene-responsive transcription factor 2 | 127 | 185 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca6g02494 | Seca-Chr6 | 87961928 | 87962737 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca6g02494 | 28 | 221 | AP2-EREBP Transcription Factor Family | AT4G27950 | 39.810 | 2.12e-35 | 127 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Seca6g02494 | AP2 | 1.8e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca6g02494 | K13434 | - | gmx:102660028 | 323.168 |