Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02494 ATGTCCGTACAATCGACTCTGAAGCTCCAGCATCTGAAGCAAACAACTGCAAGCTCCCATTTTGAAGGTGACCCACCATGCAAAACCACCGTGAGAACCCAACAGCACCAGAGGAAGCTCCTCCGGATCATACTCACCGATCACGACGCCACTGACTCTGACTCTTCCGGCGACGATGAAGAGCCACAAAACCCATCAAGGCTTCGAAGAGTGAAGAGGGAAATCACCCATGTCAACATGCATCTTCCTTTCGTCTCAGATTCTCCAACAACAACCTTTTCACCTTCTTCTTCATTTTCCTCCCTCCCTGACCCGACCCGTTTCAAGAGACCCAAGAAATCCTCCACCACCGCCGGTGCTTCTCGCCGCCGTGGCGGCAAGTTCAGGGGAGTTCGCCAGAGACCTTGGGGCCGCTGGACAGCGGAGATCCGAGACCCGACCCGCCGGAAACGGCTCTGGCTCGGGACCTTCGACACGGCGGAGGAAGCCGCCGCCGTTTACGATGAGGCTGCCGTGAAGCTTAAAGGCCCCAACGCCGTCACAAACTTCCCACACCGCGCCACTGCTAAGGCAGAGGAGGAGATGGCGGCGGAAGTTTTCTCCGGCGACGGTTTTGCGTCGCCGACGTCCGTCCTGGACTGTTACGAGCCGTTCGACGGTTTTCGTTACGGCGCGGTGGATGCCTTCGGGTTCGATATAGACGTGCCGTTAAGTCTGACGGACGTTAACTTTGTGCTAACGAGTCAGCGGTCAGGGAAGGAAGAGTTTGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCCAGTTAA 810 0.5691 MSVQSTLKLQHLKQTTASSHFEGDPPCKTTVRTQQHQRKLLRIILTDHDATDSDSSGDDEEPQNPSRLRRVKREITHVNMHLPFVSDSPTTTFSPSSSFSSLPDPTRFKRPKKSSTTAGASRRRGGKFRGVRQRPWGRWTAEIRDPTRRKRLWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPHRATAKAEEEMAAEVFSGDGFASPTSVLDCYEPFDGFRYGAVDAFGFDIDVPLSLTDVNFVLTSQRSGKEEFGEFDPDEFLTWPS. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02494 269 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Seca6g02494 269 PIRSF PTI6 7 269 IPR017392 GO:0003700
Seca6g02494 269 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 194 - -
Seca6g02494 269 MobiDBLite consensus disorder prediction 47 67 - -
Seca6g02494 269 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Seca6g02494 269 MobiDBLite consensus disorder prediction 82 130 - -
Seca6g02494 269 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Seca6g02494 269 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Seca6g02494 269 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Seca6g02494 269 MobiDBLite consensus disorder prediction 83 104 - -
Seca6g02494 269 MobiDBLite consensus disorder prediction 1 33 - -
Seca6g02494 269 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Seca6g02494 269 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Seca6g02494 269 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Seca6g02494 269 FunFam Ethylene-responsive transcription factor 2 127 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02494 Seca-Chr6 87961928 87962737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02494 28 221 AP2-EREBP Transcription Factor Family AT4G27950 39.810 2.12e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g02494 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02494 K13434 - gmx:102660028 323.168