Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02487 ATGTCAAAATTACTGAAATTAAGCCTTAGGAATTGCAACTTACAAGGACCAATTCCTGATTTAAGCAGGATGCCTCACCTTCTTTATCTTGACCTCAGTTCCAATCAGTTGAGTGAATCAATTCCTTCTAATAAGCTTTCTGAAAATATCACAACAATCATATTATCAAACAACAATCTTACTGGAACTATTCCATCCTCCTTTTCTGGTCTTCCACGTCTCCAAAAATTGTCACTTGCTAACAATTCATTGACCGGTGGTGTTCCTTCCACCATTTGGCAAACCAAGACTTCAAATGAAAAAGAAAGACTTCTCTTGGAATTTGAAAATAATAAATTTACAACCATATCAGGAAGTACTAATCTTCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCTTTATGCTCAAATAACACCCTGGATCAATTCTGTAAATCTGAAGGTGTTAATGACACAAATGGCACATTTCCATCAAACTCGAGTGACTTTTGTCCCACTCAAGCATGCCCTCCTCCTTATGAATACTCTACGAATTGTTTTTGTGCAGCTCCATTGCTTATTGGTTTTCGACTAAAAAGTCCTGGATTTTCAGATTTTCCTCCATACTTGAACACATTTGTGAAATACATGACTTCTGGTCTTAAAATTCATTCCAATCAACTCAACTTTACTTTTCGGTGGCAAACAGGACCTCGATTGAGAATGAATTTAAAGCTTTTTCCTTTATATGTTGATAACAATAGTTCTCATACTTTCAATAGAAGTGAGGTTCAAAGGATAATAAGCTTATTCACAGAATGGACATTTCCTAGTGATGATTTGTTTGGGCCTTATGAACTGATTGACTTGACTCTCCTGGATCCTTACAAGGACGTGATTGACACCTCTTCAAAAGTAGGCATAGGGACAGCTGCAATGGTTGGCATAATCTTAGGATCAATTGCTTGTGTAATGACATTGTCTGCAACTGTTATTGTTTTCATATTAAGAAAACGATTGAGAGGTAGTCATGGAGTTTCCAAACCACGTCATGCACCTAAGACATCAATAAAAATTGATGGCGTAAAGGCCTTCACTTATGAAGAGTTGTCCTCTGCTACAAACAATTTTGACTCCTCTGCTCAAGTTGGACGAGGGGGATATGGGAAAGTTTATAAAGGTATTATTTCTGATGGCACAGTTGTTGCCATAAAACGTGCCCAACAGGGATCACTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCAATACTCTCAAGGTTACATCATCGTAACCTTGTTACTCTGATTGGATATTGTGATGAAGAAGGTGAACAGATGCTTGTTTATGAATTTATATCGAATGGCACACTAAAGGACCACCTTTTTGATACATCAGAAAAGCCTCTAACTTTTTCCATGAGACTGAAGATAGCCCTAGGGACAGCCAAAGGTCTAACATATCTACACACAGAAGCTGATCCACCAATATTTCACCGAGATGTCAAGGCCAACAACATATTATTGGATGATAAATTCAATGCAAAAGTGGCTGATTTTGGACTTTCAAAGCTTGCCCCAGTTCCAGATATTGAAGGAATTGTTCCTGGTCATGTATCTACATTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTAGAACTTTTGACTGGAATGCAACCTATCTCACATGGCAAAAATATTGTAAGAGAGGTTACTGATGCTTACCACTCTGGTGAGATATTTTCAGTTATTGATGGACGCATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTTACTTTAGCCCTTAAGTGTTGCCAAGACGAGCCAGAGGCACGTCCTAAAATGGCACAAGTGGTTAGAGTGCTTGAAAACATATGTTCAATGATGCCAGATTCAGATACCATGAGAGTTGAATATATAACCAATGATTCTGGCAGAGGAGCAATCAGTACATCATCTTCATCCTCTGTTATAAGGACTCCTTTTGTATCAGCAGATGTGTCAGGTAGTAACCTTGTTAGTGGTGTAATACCAAGCATCAATCCAAGATAA 2106 0.3851 MSKLLKLSLRNCNLQGPIPDLSRMPHLLYLDLSSNQLSESIPSNKLSENITTIILSNNNLTGTIPSSFSGLPRLQKLSLANNSLTGGVPSTIWQTKTSNEKERLLLEFENNKFTTISGSTNLPPNVTLLLDGNPLCSNNTLDQFCKSEGVNDTNGTFPSNSSDFCPTQACPPPYEYSTNCFCAAPLLIGFRLKSPGFSDFPPYLNTFVKYMTSGLKIHSNQLNFTFRWQTGPRLRMNLKLFPLYVDNNSSHTFNRSEVQRIISLFTEWTFPSDDLFGPYELIDLTLLDPYKDVIDTSSKVGIGTAAMVGIILGSIACVMTLSATVIVFILRKRLRGSHGVSKPRHAPKTSIKIDGVKAFTYEELSSATNNFDSSAQVGRGGYGKVYKGIISDGTVVAIKRAQQGSLQGEKEFLTEISILSRLHHRNLVTLIGYCDEEGEQMLVYEFISNGTLKDHLFDTSEKPLTFSMRLKIALGTAKGLTYLHTEADPPIFHRDVKANNILLDDKFNAKVADFGLSKLAPVPDIEGIVPGHVSTLVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVTDAYHSGEIFSVIDGRMGSYPSEHVEKFFTLALKCCQDEPEARPKMAQVVRVLENICSMMPDSDTMRVEYITNDSGRGAISTSSSSSVIRTPFVSADVSGSNLVSGVIPSINPR. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02487 701 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Seca6g02487 701 Gene3D Ribonuclease Inhibitor 44 157 IPR032675 -
Seca6g02487 701 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 661 - -
Seca6g02487 701 Gene3D Phosphorylase Kinase; domain 1 342 446 - -
Seca6g02487 701 SUPERFAMILY L domain-like 2 141 - -
Seca6g02487 701 Pfam Leucine rich repeat 49 89 IPR001611 GO:0005515
Seca6g02487 701 Gene3D Transferase(Phosphotransferase) domain 1 447 661 - -
Seca6g02487 701 ProSiteProfiles Leucine-rich repeat profile. 26 47 IPR001611 GO:0005515
Seca6g02487 701 SMART serkin_6 371 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02487 701 ProSiteProfiles Protein kinase domain profile. 371 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02487 701 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 447 656 - -
Seca6g02487 701 Gene3D Ribonuclease Inhibitor 1 43 IPR032675 -
Seca6g02487 701 CDD STKc_IRAK 377 643 - -
Seca6g02487 701 SUPERFAMILY Protein kinase-like (PK-like) 356 669 IPR011009 -
Seca6g02487 701 Pfam Protein kinase domain 373 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02487 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Seca6g02487 701 FunFam Leucine-rich repeat protein kinase family protein 337 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02487 Seca-Chr6 87814312 87822593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02487 1 91 Receptor kinase-like Gene Family AT5G01950 35.789 5.53e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca6g02487 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02487 - - gmx:100786467 1036.94