Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02486 ATGTATCTTTCAAAGGGTCATAAACATGGAGTTGTTTTCATCTTGTGGTTCTGCTGCTATTTGCTACTGGCTGCTGCGCAGAATAATATCACTGACCCAACTGAAGTTGAAGCATTGAAAGCCATAAAGAACAGTTTGATAGATCCTAATGGAAATTTAAGCAATTGGAATCGTGGAGACCCATGTACATCTCGCTGGACAGGAGTTTTGTGCTTCAATGAAACATTAGTGGATGGCTTTCTACATGTTCAAGAATTGCAACTGTTTAATTTGAGCTTGTCTGGAACTTTGGCACCAGATATTGGCAACTTAGCTTATACGGAAATATTGAACTTCATGTGGAACAAAATAACTGGGAGTATTCCAAAGGAAATTGGCAATATCAAAACTTTACAACTGTTGCTCGTGAATGGAAATGAATTAACAGGTCCACTGCCGGAGGAGCTTGGCTATCTTCCAAACCTTGATAGAATACAGATTGATCAGAACAATATATCAGGACCTCTACCTACATCATTTGCAAACCTGAACAAGACAAAGCACTTTCACATGAACAATAATTCAATTAGCGGGCAAATCCCACCGGAACTTTCCCGATTACCCAACCTTGTTCACCTCCTTCTCGACAATAACAATTTATCAGGATATCTTCCCCCTGAGCTGTCCTCTTTGCCAAGCTTACTTATACTTCAACTTGATAACAATAACTTTGGTGGAAATACCATTCCGGATGCTTATGGCAACATGTCAAAATTGTTGAAGTTGAGCCTTAGGAATTGTCACTTGCAAGGACCAGTTCCTGATTTAAGCAGGATATCTCACCTTCTTTATCTTGATCTCAGTTCCAATCAGTTAAATGAATCAATTCCTCCTAATAAGCTTTCTGAAAATATCACAACCATTGATTTATCTAACAACAATCTTACTGGAACTATTCCATCCTACTTTTCTAGTCTTCCACGCCTTCAGAAATTGTCGCTTGCAAACAATTCATTGACGGGCAGTGTTCCTTCCACCATTTGGCAGAACAAAACTTTAAATGGAACAGAAAGATTTCTCTTGGAGTTGGAGAATAATAAATTTACAAACATATCAGGCGATACTAATCTGCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCTCTATGCTCAAATAAAACCCTGAGTCAATTCTGTAGATCTGAAGGTGCTGATGACTCAAATGGCCTATTTCCAACAAACTCGAGTAACTCGTGTCCTGCTCAATCATGCCCTCCTCCTTTCGAATACTCTGTGGATTGTTTCTGTGCGGTCCCGTTGCTTGTTGGTTATCGACTGAAAAGTCCTGGGTTTTCAGATTTTCTTCCATACTTGAATACATTTGAGGAATACCTGACTTCTGGTCTTAGTATACATACCAATCAGCTAAACTTTACTGTTCAGTGGCAAGCAGGACCTCGACTGAGAATGAACTTGAAGATTTTTCCTGTATATGTTGATAACACCAGTTCTCATACTTTTAATAGCAGTGAGGTCCTGCGGATCAGAAGCATGTTCACTGGTTGGAAAATTCCTGACAGTGATTTATTTGGGCCTTATGAACTGATTAACTTCATTCTCCTGCCTCCATACAATGATGCAGTGATAACCACCTCTTCAAAATCAGGGATAAGTACAGGTGCACTAGTTGGCATAATCTTAGGGTCAATTGCCTGTGCAGTGACGTTGTCTGCAATTGTTACTCTTCTTATATTAAGAATACAATTGAGAAAACATCATGCAGTTTCTAAAAAACGTCATGCATCTAAAATCTCAATAAAAATTGATGGCGTAAGGGCCTTTACCTTTGGAGAATTGTCCTCTGCTACAAACAATTTTAGTAGCTCTGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTATATAAAGGTATTCTTGTAGATGGCACAGTTGTTGCCATAAAACGTGCACAAGAAGGATCCCTACAAGGTGAGAAGGAGTTCCTTACTGAAATATCATTATTGTCAAGGTTACATCATCGCAACCTTGTGTCTCTGATCGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATATATGTCAAATGGCACACTAAGGGATCACCTTTCTGTTACATCAAAAGAACCCCTGTCTTTCGCCATGAGATTGAAGATTGCACTAGGGGCAGCTAAAGGTCTTGCATATCTACACACAGAGGCTGATCCTCCAATATTTCACCGAGATGTCAAGGCCAGCAACATATTATTGGACTCCAAGTTCTCTGCAAAAGTGGCTGATTTTGGTCTTTCACGACTTGCTCCAGTTCCGGATATTGAAGGGATTGTGCCTGGTCATGTATCTACAGTCGTAAAGGGAACCCCAGGTTACCTTGATCCAGAATACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTTTGACTGGGATGCAACCTATCTCACATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATATCAATCTGGTGTAATATTTTCAATTATTGATGGACGAATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTGAGTTTGGCCCTAAAGTGTTGTGAAGATGAGCCAGATGCACGGCCTAAAATGGCAGAAGTGGTTAGAGAGCTTGAAAACCTATGGTCTGTGATGCCGGATTCAGATACCAGGAGAGCTGAATCTATAACCAGTGATTCTGGCAAAGAAATCAGTGCACCATCTTCATCCTCTGCTATAAAAACTCCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTATTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2850 0.4018 MYLSKGHKHGVVFILWFCCYLLLAAAQNNITDPTEVEALKAIKNSLIDPNGNLSNWNRGDPCTSRWTGVLCFNETLVDGFLHVQELQLFNLSLSGTLAPDIGNLAYTEILNFMWNKITGSIPKEIGNIKTLQLLLVNGNELTGPLPEELGYLPNLDRIQIDQNNISGPLPTSFANLNKTKHFHMNNNSISGQIPPELSRLPNLVHLLLDNNNLSGYLPPELSSLPSLLILQLDNNNFGGNTIPDAYGNMSKLLKLSLRNCHLQGPVPDLSRISHLLYLDLSSNQLNESIPPNKLSENITTIDLSNNNLTGTIPSYFSSLPRLQKLSLANNSLTGSVPSTIWQNKTLNGTERFLLELENNKFTNISGDTNLPPNVTLLLDGNPLCSNKTLSQFCRSEGADDSNGLFPTNSSNSCPAQSCPPPFEYSVDCFCAVPLLVGYRLKSPGFSDFLPYLNTFEEYLTSGLSIHTNQLNFTVQWQAGPRLRMNLKIFPVYVDNTSSHTFNSSEVLRIRSMFTGWKIPDSDLFGPYELINFILLPPYNDAVITTSSKSGISTGALVGIILGSIACAVTLSAIVTLLILRIQLRKHHAVSKKRHASKISIKIDGVRAFTFGELSSATNNFSSSAQVGQGGYGKVYKGILVDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMSNGTLRDHLSVTSKEPLSFAMRLKIALGAAKGLAYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDIEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGVIFSIIDGRMGSYPSEHVEKFLSLALKCCEDEPDARPKMAEVVRELENLWSVMPDSDTRRAESITSDSGKEISAPSSSSAIKTPFVSGDVSGSDLISGVIPSIKPR. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02486 949 PANTHER RECEPTOR-LIKE PROTEIN 55 42 891 - -
Seca6g02486 949 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Seca6g02486 949 Gene3D Phosphorylase Kinase; domain 1 581 695 - -
Seca6g02486 949 SMART LRR_typ_2 319 343 IPR003591 -
Seca6g02486 949 SMART LRR_typ_2 200 223 IPR003591 -
Seca6g02486 949 SMART LRR_typ_2 152 175 IPR003591 -
Seca6g02486 949 SMART LRR_typ_2 272 296 IPR003591 -
Seca6g02486 949 SMART LRR_typ_2 224 248 IPR003591 -
Seca6g02486 949 Gene3D Ribonuclease Inhibitor 31 291 IPR032675 -
Seca6g02486 949 CDD STKc_IRAK 626 892 - -
Seca6g02486 949 MobiDBLite consensus disorder prediction 910 929 - -
Seca6g02486 949 Gene3D Transferase(Phosphotransferase) domain 1 696 911 - -
Seca6g02486 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Seca6g02486 949 SUPERFAMILY L domain-like 46 390 - -
Seca6g02486 949 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca6g02486 949 MobiDBLite consensus disorder prediction 900 949 - -
Seca6g02486 949 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 906 - -
Seca6g02486 949 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 293 422 - -
Seca6g02486 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Seca6g02486 949 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Seca6g02486 949 Pfam Leucine rich repeat 297 343 IPR001611 GO:0005515
Seca6g02486 949 Pfam Protein kinase domain 622 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02486 949 ProSiteProfiles Protein kinase domain profile. 620 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02486 949 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Seca6g02486 949 SMART serkin_6 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02486 949 SUPERFAMILY Protein kinase-like (PK-like) 605 903 IPR011009 -
Seca6g02486 949 Gene3D Ribonuclease Inhibitor 292 419 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02486 Seca-Chr6 87776055 87787439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02486 18 902 Receptor kinase-like Gene Family AT5G01950 60.802 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca6g02486 Pkinase 9.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02486 - - gmx:100786467 1526.15