Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02485 ATGGGAAGGAGACCGGCGAGGTGTTACCGGCAGATAAAGAACAAGCCATACCCGAAGTCACGGTTCTGCCGCGGTGTTCCGGATCCGAAGATCCGAATCTATGACGTAGGGATGAAGAAGAAAGGGGTAGATGAGTTCCCGTTCTGCGTGCACCTGGTGTCATGGGAGAAGGAGAACGTTTCGAGCGAGGCACTGGAAGCGGCACGTATAGCATGCAACAAGTACATGTCGAAGTTCGCGGGGAAGGACGCGTTCCACCTGCGCGTGAGGGTGCACCCCTTCCATGTGCTGCGCATCAACAAGATGCTATCGTGCGCAGGGGCGGATAGGCTCCAAACAGGGATGAGAGGTGCGTTTGGGAAACCTCAGGGGACGTGTGCTAGGGTTAACATTGGTCAGGTTCTTCTCTCCGTTCGGTGTAAGGATAGTAACGGGAATCACGCTCAGGAAGCTCTGCGTCGTGCCAAGTTCAAGTTCCCTGGTCGCCAGAAAATCATTATCAGCCGAAAGTGGGGATTTACTAAGTTGAGCCGAGCTGACTATTTGAACTTGAAGTCTGAGAACAGAATTATGCCGGATGGAGTCAATTGCAAGGTTCTTGGGTGCCATGGACCTTTGGCAAATCGTCAGCCTGGAAGAGCTTTCTTGCCAGCTACTGCTTAG 663 0.5309 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSNGNHAQEALRRAKFKFPGRQKIIISRKWGFTKLSRADYLNLKSENRIMPDGVNCKVLGCHGPLANRQPGRAFLPATA. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02485 220 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca6g02485 220 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca6g02485 220 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Seca6g02485 220 FunFam 60S ribosomal protein L10 1 206 - -
Seca6g02485 220 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca6g02485 220 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca6g02485 220 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca6g02485 220 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca6g02485 220 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02485 Seca-Chr6 87772007 87773668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02485 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.909 4.77e-143 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02485 K02866 - gmx:100779884 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02485 6 87772007 87773668 Seca6g02485 6 87772007 87773668 ECH