Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02484 ATGTCCAGAACTCCATGCTCGGAAAATTGGAGATTAAAAGACTTAGGAAGTAAAGCTTTAGTGAAGAAATCAACCATTTGGCAAGAAGAAGTAACAGGTAACAACCGCATGAGCCCGGAGTGTAGCTTGTCCCGGACCACATGGCAATCTATCTCAAGGCTTGTGAATGGAAATGAATTAACAGGTCCACTGCCGGAGAAGCTTGGCTATCTTCCAAACCTTGATAGAATACAGATTGATCAGAACAATATATCAGGACCTCTACCTACATCATTTGCAAACCTGAGCAAGACGAAGCACTTTCACATGAACAATAATTCACTTAGCGGGCAAACACCACCGGAACTTTCCCGATCACCCAACCTTGTTCACCTCCTCCTCGACAACAGCAATTTATCAGGAAATCTTTCCCTGAGCTGTCCTCTTTGCCAAGCTTACTTATACTTCAACTTGATAACAATAACTTTGGCGGAAATTCCATTCTGGATGCTTATGGCAAAATTGTTGAAGTTGAGCCTTAGGAATTGTAACTTGCAAGGACCAGATCCTGATTTAAGCTGGATATCGCACCTTCTTTATCTTGATTTTTTAGTGTTTTCATTTTCAGAGCACACAACACAACCATGGGAAGGAGACCGGCGAGGTGTTACTGGCAGATCAAGAACAAGCCATAGCCGAAGTCACGGTTCTGCCTCAGTGTTCCGGATCTTCGGATCGAAGATCCGAATCTATGATGTAGGGACGAAGAAGAAAGGGGAAGATGAGTTCCCGTTCTGCGTGCACCTGGTGTCATGGGAGAAGGAGAGCGTTTCGAGCGAGGCACTGGAAGCGGCACATATAGCATGCAACAAGTACATGTCGAAGTTTGCGGGGAAGGACGCGTTCCACCTCCGCATGAGGGTGCACCCCTTCCATGTGCTGCCCATCAACAAGATGCTATCGTGCGCAGGGGCTGATAGGCTTCAAACAGGGATGAGAGGGATAGTAATGGGAATCACGCTCAGGAGGCTCTGCGTCGTGCCAAGTTCAAGTTCCCTGGTCGCCAGAAAATCATTATCAGCCGAAAGTGGCACTGATATCACTCTTTTGTTACAGTCCTGA 1101 0.4659 MSRTPCSENWRLKDLGSKALVKKSTIWQEEVTGNNRMSPECSLSRTTWQSISRLVNGNELTGPLPEKLGYLPNLDRIQIDQNNISGPLPTSFANLSKTKHFHMNNNSLSGQTPPELSRSPNLVHLLLDNSNLSGNLSLSCPLCQAYLYFNLITITLAEIPFWMLMAKLLKLSLRNCNLQGPDPDLSWISHLLYLDFLVFSFSEHTTQPWEGDRRGVTGRSRTSHSRSHGSASVFRIFGSKIRIYDVGTKKKGEDEFPFCVHLVSWEKESVSSEALEAAHIACNKYMSKFAGKDAFHLRMRVHPFHVLPINKMLSCAGADRLQTGMRGIVMGITLRRLCVVPSSSSLVARKSLSAESGTDITLLLQS. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02484 366 SUPERFAMILY Ribosomal protein L16p/L10e 238 327 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca6g02484 366 SUPERFAMILY L domain-like 56 202 - -
Seca6g02484 366 Pfam Ribosomal protein L16p/L10e 221 331 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca6g02484 366 CDD Ribosomal_L16_L10e 251 327 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca6g02484 366 Gene3D Ribosomal protein L10e/L16 219 333 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca6g02484 366 PANTHER 60S RIBOSOMAL PROTEIN L10 237 327 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca6g02484 366 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02484 Seca-Chr6 87767501 87771497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02484 240 327 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 89.773 1.68e-51 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02484 K02866 - gmx:100786467 174.096