Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02465 ATGGATGCCATGTCCTCCGTTCTCAAGGAATACTTCGGGTTTTCGGATTTTCGGCCTTATCAGAAAGATGTTATTCAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTCATGGCTACTGGTAGTGGAAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAAAAAGACTGGGATAGTTGTAAGCCCTCTGATATCATTGATGCAAGACCAGGTAATGGCTTTGAAGCAGCGGGGTATCAAAGCTGAATATCTTGGAAGCGCTCAGAAGGATTTCACTGTTCAGACTAAAGCTGAGCGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCTAACTTGCTAAAGGAAGGGATTAGTCTTTTGGCTGTTGATGAAGCGCATTGCATATCAGAATGGGGGCATGATTTTCGGGTTGAATACAAGCACTTAGACAAGTTACGTAGTGTTCTGTTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATTTGACATCATCAGTTCCCTAAAGATGAATGATCCTTATGTTTTAGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCTAATTAACCGTGGACAATCTTTTATTGATGAGCTTGTGCAAGAAATTTCAAAAAAAGTTTCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAACAGATATCCAAGTCACTTGCAGAAGCAGGTATTAAGGCTGGAATGTACCATGGTCAAATGAATGGAAGATCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAATCATGGTGGCCACAATTGCTTTTGGCATGGGCATAGATAAACCTAACATCAGACAAGTGATTCACTATGGTTGCCCCAAGAATCTAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGCATAGCTTCTGTTTGTTGGCTTTACTACACCAGAAGTGACTTTGCAAAGGGCGAATTTTATTTTGGAGATTTAAAATCAGAAAACCAAAAAAGAGCTGCTATGGAGTCACTGAAGGCTGCTGAACGCTATTGTGTGCTGGCAACTTGCAGAAGAAAGCTCTTGCTTGAATACTTTGGGGAAAAATTTTCAGCTGATAGATGTGGTTTGCCTTTCACTCAAAGCTTAAGCTATTTAGTAACCTGCCATTTTTATTTCATTCTTTATAGAAATTCTAACACCCTCCCTCAAACTATACCATTACCATATACTCCCTCCATTCCATTTTGA 1305 0.4023 MDAMSSVLKEYFGFSDFRPYQKDVIQKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDFTVQTKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLLAVDEAHCISEWGHDFRVEYKHLDKLRSVLLDVPFVGLTATATEKVRFDIISSLKMNDPYVLVGSFDRPNLFYGVKLINRGQSFIDELVQEISKKVSSGGSTIIYCTTIKDVEQISKSLAEAGIKAGMYHGQMNGRSREESHRLFVRDELQIMVATIAFGMGIDKPNIRQVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGEFYFGDLKSENQKRAAMESLKAAERYCVLATCRRKLLLEYFGEKFSADRCGLPFTQSLSYLVTCHFYFILYRNSNTLPQTIPLPYTPSIPF. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02465 434 CDD SF2_C_RecQ 200 335 - -
Seca6g02465 434 CDD DEXHc_RecQ 6 199 - -
Seca6g02465 434 FunFam ATP-dependent DNA helicase 200 396 - -
Seca6g02465 434 SMART helicmild6 245 326 IPR001650 -
Seca6g02465 434 NCBIfam RecQ family ATP-dependent DNA helicase 6 390 IPR004589 GO:0004386|GO:0006310
Seca6g02465 434 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 371 IPR001650 -
Seca6g02465 434 FunFam ATP-dependent DNA helicase 1 198 - -
Seca6g02465 434 Pfam RecQ zinc-binding 339 394 IPR032284 -
Seca6g02465 434 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 395 - -
Seca6g02465 434 Gene3D - 1 198 IPR027417 -
Seca6g02465 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Seca6g02465 434 Gene3D - 200 404 IPR027417 -
Seca6g02465 434 Pfam Helicase conserved C-terminal domain 218 325 IPR001650 -
Seca6g02465 434 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Seca6g02465 434 SMART ultradead3 13 210 IPR014001 -
Seca6g02465 434 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02465 Seca-Chr6 87353239 87358049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02465 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 21.839 6.05e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02465 K03654 - gmx:100797777 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02465 6 87353239 87358049 Seca6g02465 6 87353239 87358049 ECH