Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02458 ATGAAACCCTTTTTGCTCATGTTACTTGCATTTTGGCCTATATGCCTTTATATATTTCCATTGGGGTTTGGCCTAAACACAATATTTGCCTCTGCATCTGGAAACAATACTGACGACCATTTGGCATTGCTCAAATTCAAGGAATCAATATCTAGTGACCCATATGGAATCCTTGATTCTTGGAATAGTTCTACCCACTTTTGCAAGTGGCATGGAATCACATGCAACCCCATGCATCAAAGAGTCACAGAGTTAAACCTAGAAGGATATCAATTGCATGGATCCATATCCCCCCATGTTGGAAATCTCTCTTTTTTGAGATACCTGAACCTTCCAAACAATAGCTTCTTTGGACAAATCCCACAGGAAATTGGTCGGTTGTTACAATTGCAGCAACTGGATCTCACCAATAACTCATTGGCAGGAGAAATTCCCTCAAACTTGACAAGTTGTTCAGATCTCAAAGGCTTATACTTATTTGGGAACAAATTGATTGGAAGAATCCCAATTGAAATTGGCTCCCTTCAAAAGCTTCAAATGTTGAGAGTTGGGAAAAACAATCTAATTGGTGGAGTCCCACCATCCATAGGAAATCTTTCATCCCTAATTTGTCTCTCAGTGTTTTATAATAACTTAGAAGGAGATATTCCACAAGAAATATGCCACCTTAGAAACTTGACAAAAATATCAGTGGCTCTCAACAAACTATCTGGTACATTTCCTTCTTGTCTTTACAACATGTCTTCTCTTACTATGTTCTCAACTGCACAAAATGAATTTAATGGCTCTCTTCCACCCAACATGTTCCACAACCTCCCATATCTCCAATATTTTGGAGTTGGTGCCAATCAAATCTCAGGTCCAATCCCCACTTCTGTTGTAAATGCTTCTACCCTTACAACACTTGATATTGGTAGAAACCATTTTTCTAGACAAGTTCCAAGTCTAGAGAAGTTACAAGAACTTCAGTTTCTACATTTGGGAATGAACAATCTAGGTGACAATTCAACTAAGGATTTGCAATTTTTAAAATCATTGACAAATTGTAGCAAGTTGTATATGGTCGATATATCTAACAATAATTTTGGAGGCCATTTACCACATGCCTTAGGAAATTTGTCCACTAACCTCATTCAACTATATCTTGGGGGTAATCATATATTAGGAAAAATTCCTGTGGAATTGGGAAATTTAATTAGCTTAACTCTCTTGACCATGGAAAATAGTGGTTTTGAAGGGAGGATTCCAACTACTTTTGGGAAGTTTCAGAAGATGCAACAGTTAAAATTGAATGGAAACAAGCTGTCAGGAGATATACCAACCATCATAGGCAACCTTAGTCAATTGTATCATTTGAGCTTAGCACAAAATATCTTAGAAGGAAGTATTCCTCCAAGTATAGGAAACTGCAAGATGTTACAATATCTAGACCTTTCTCAAAACAACCTTAAAGGAACCATACCCCCAGAAGTTTTTAGTCTTTCATCTCTAACAATAGGTCTGAACTTATCACAAAACTTGTTGAGTGGCAATCTACCTGATGATGTGGGTTCACTAAAAAATATTGGGAACATGGATATCTCTGAAAATCATTTGTCTAGTGAAATTCCTAAAACCATTGGAGAATGCACAAGCTTGGAGTATCTTTATTTGCAAGGGAACCTCTTCCATGGAATTATACCAACCTCTTTGGCTTCACTCAAAGGCCTTCGACAGTTAGACCTATCACAAAACTGCTTGTCTGGATCAATACCTGATGTTCTACAAAATATTTATGTTTTAGAACATTTAAATGTTTCTTTTAACATGTTAGATGGTGAGGTACCAACACAAGGTGTCTTTGGAAATGCAAGCAAGTTGGGGGTGATTGGAAATAGTCAGCTTTGTGGAGGTATTTTGGAGTTACATCTACCACCATGCATTGCCAAAGGTAAGAAACTTGTAAAATTCCATAATTTCAAGTTCATAACAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATACTTCTATCTATTCTAACTATCTATTGTATGAGGAAAAGAAACAAGACACCATCTTCTAATCTACCAACAGTTAACCGTTTCGCTAAGCTTTCATACCAAATCCTATACCATGGAACCGAAGGGTTCTCTACAAGAAACTTGATAGGATTTGGAAGTTTTAGCGCTGTGTACAAAGGAATCATTGAGTCATATGACAGAGTCGTTGCCATAAAAGTCCTAAATCTTCAAAATATAGGATCTCACAAGAGTTTCTTTGCTGAATGCAATGCATTAAAAAATATCAGGCATCGAAATTTGGTTAAGATTCTATCATGTTGTTCCAGTATTGATTACAATTGTCAAGAATTTAAAGCTCTAGTTTTCGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTACATCCGACAACAAAAATTGCAAACCAGCCTAGATCACTAGACCTTGAGGAAAGGTTGAATATTATTACTAATGTTGCTATAGCATTTCATTATCTTCACTATGAATGTGAGCAAGTAATCATTCATTGTGATCTAAAGCCTAGCAATGTTCTTCTTGATGAGTTCATGGTAGCTTATGTCAGTGATTTTGGCTTAGCAAGATTGCTCCCAAGTATTGGATTCTCTTCAATGCAAAGTGGCACGATTGGAATAAAAGGGACTATTGGCTATGTTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCAATTGAAGGTGACATGTACAGCTTTGGAATTCTTGTACTAGAAATGTTAACTGGAAGGAGACCCACAGATGAAATGTTTAAAGATGATCATAATCTCCATAATTATGTTGAACATTCAATTTCAAATCACCTTTTGCAAATTGTGGACCCAACTATTCTCCCCAATGAATTAAAGCAGGCTGTTGACAACAAGAACCCTGGCCTTATGCATCCTAATATAGAGAAATGTTTATTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCATAAGTGAGCTTAATCTAATCAAAAGTTTCTTTCCTTTCTGGGTTTAG 3060 0.3657 MKPFLLMLLAFWPICLYIFPLGFGLNTIFASASGNNTDDHLALLKFKESISSDPYGILDSWNSSTHFCKWHGITCNPMHQRVTELNLEGYQLHGSISPHVGNLSFLRYLNLPNNSFFGQIPQEIGRLLQLQQLDLTNNSLAGEIPSNLTSCSDLKGLYLFGNKLIGRIPIEIGSLQKLQMLRVGKNNLIGGVPPSIGNLSSLICLSVFYNNLEGDIPQEICHLRNLTKISVALNKLSGTFPSCLYNMSSLTMFSTAQNEFNGSLPPNMFHNLPYLQYFGVGANQISGPIPTSVVNASTLTTLDIGRNHFSRQVPSLEKLQELQFLHLGMNNLGDNSTKDLQFLKSLTNCSKLYMVDISNNNFGGHLPHALGNLSTNLIQLYLGGNHILGKIPVELGNLISLTLLTMENSGFEGRIPTTFGKFQKMQQLKLNGNKLSGDIPTIIGNLSQLYHLSLAQNILEGSIPPSIGNCKMLQYLDLSQNNLKGTIPPEVFSLSSLTIGLNLSQNLLSGNLPDDVGSLKNIGNMDISENHLSSEIPKTIGECTSLEYLYLQGNLFHGIIPTSLASLKGLRQLDLSQNCLSGSIPDVLQNIYVLEHLNVSFNMLDGEVPTQGVFGNASKLGVIGNSQLCGGILELHLPPCIAKGKKLVKFHNFKFITVIVSVVAFLLILLSILTIYCMRKRNKTPSSNLPTVNRFAKLSYQILYHGTEGFSTRNLIGFGSFSAVYKGIIESYDRVVAIKVLNLQNIGSHKSFFAECNALKNIRHRNLVKILSCCSSIDYNCQEFKALVFEYMKNGSLESWLHPTTKIANQPRSLDLEERLNIITNVAIAFHYLHYECEQVIIHCDLKPSNVLLDEFMVAYVSDFGLARLLPSIGFSSMQSGTIGIKGTIGYVPPEYGMGSEVSIEGDMYSFGILVLEMLTGRRPTDEMFKDDHNLHNYVEHSISNHLLQIVDPTILPNELKQAVDNKNPGLMHPNIEKCLFSLFRIGLACSVESPKERMSMVDVISELNLIKSFFPFWV. 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02458 1019 PANTHER OS04G0122200 PROTEIN 222 1011 - -
Seca6g02458 1019 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Seca6g02458 1019 Pfam Protein kinase domain 712 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02458 1019 Gene3D Phosphorylase Kinase; domain 1 691 791 - -
Seca6g02458 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Seca6g02458 1019 Gene3D Ribonuclease Inhibitor 194 344 IPR032675 -
Seca6g02458 1019 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Seca6g02458 1019 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 646 - -
Seca6g02458 1019 SUPERFAMILY L domain-like 375 630 - -
Seca6g02458 1019 Gene3D Ribonuclease Inhibitor 345 640 IPR032675 -
Seca6g02458 1019 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 76 342 - -
Seca6g02458 1019 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Seca6g02458 1019 SMART serkin_6 710 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02458 1019 SUPERFAMILY L domain-like 36 332 - -
Seca6g02458 1019 Gene3D Transferase(Phosphotransferase) domain 1 792 1014 - -
Seca6g02458 1019 FunFam LRR receptor-like serine/threonine-protein kinase EFR 680 791 - -
Seca6g02458 1019 SUPERFAMILY Protein kinase-like (PK-like) 684 1009 IPR011009 -
Seca6g02458 1019 SMART LRR_typ_2 567 590 IPR003591 -
Seca6g02458 1019 SMART LRR_typ_2 446 470 IPR003591 -
Seca6g02458 1019 SMART LRR_typ_2 175 199 IPR003591 -
Seca6g02458 1019 SMART LRR_typ_2 247 271 IPR003591 -
Seca6g02458 1019 SMART LRR_typ_2 127 151 IPR003591 -
Seca6g02458 1019 SMART LRR_typ_2 471 494 IPR003591 -
Seca6g02458 1019 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Seca6g02458 1019 ProSiteProfiles Protein kinase domain profile. 710 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02458 1019 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 792 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02458 Seca-Chr6 87255102 87258313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02458 39 1015 Receptor kinase-like Gene Family AT3G47570 44.590 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca6g02458 Pkinase 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02458 - - gmx:100792724 1375.15