Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02445 ATGGCGAAGAGGGAGACGGTGGTGCCCGAACTAGAACCGCCGGACGATCTCCGATGCCGGCGGAGTGACGGCAAGTCGTGGCGGTGCCGTCACTGGAGGATTCACAATCAAAAGTACTGTGAGGAGCATTACTTATCCTACAGGGCAAGGTCTTTTCACCCTATCAAACAAAGGAAATCCACCGTTTCTGCTTCTGCTTCAGCTTCCGCGCCAAAGGACGATGATGATGATGAAGAAGAAGACGAGCGAACTGTTCACCGGAGTAGCAATGCCAAGCCCCAAGCAGACCGTAAGAAGAACTCGAAGAGGCTTCGAGAAGAAGAAGTGACTGTTTCGGAGGAGAAAACTCAGAAAACCGAAAACAAGAAGGTGGAAATCAAAGCGGAACGAGAATGTTCGAATCTGAAGGAGGAAAAATCTGACGGAACGGTGCTACTGGACAGGAAAGCCAGGATTAGAGAGAAGATCAAGAAAACGCTTCAATTGGTTGATGATGAACCGGAACCAGCCACGAGGAGAAGGTCTTCTTCCACCAAAAAAGAAAAACCTAGTGGCCCTGGGATGTGTCATCAATGCCAGAGAAATGATAAGAGAGTTGTTTGCTGCAAAATTTGCAACGCCAAACGCTTTTGTGTCCCCTGTATTCAGAGATGGTATCCGCATATGTCGGAGGAGGCTATAGCAGAATCTTGTCCATATTGTCAAGGCAATTGTAACTGCAAGGCATGTTTACGTAGAAAAGATAAAATTACGGATCCTGGAGATTTAGGAATGCCTCTAAATCAAGATGAAAAGATTCAACATCTGAAGCATTTGATACAATCATTGTATCCTTTCCTGGAACAATTTAATCATGCACAGCAGTTGGAAATGGAGATCGAAGCAAAAATTAGAGGGTTATTGCTTTCAGATTTAGAAGTAAACCAAATTGATTGTTCCCAATATGAACGTATTTATTGCAACAATTGCAAAACTTCTATAATCGATTTTCACAGGAGCTGCCCAAATTGTTCATATGATCTTTGCCTTACTTGTTGCCGGGAAATTCGTGGCTATTTCTTGCAAGAGGAAATCGTCCAGCAATATACTGATGTTTCTAATGCTCACTTGCATAGTGGAGAGCCTTTAGATCTGCAGTCATACAAGAAAGAATCATCAGACATTTGTCTTCAGTCAAGCTCTAAGAACTCTGAGAGACCCAAGCCCAAGCATGTATGGAGGAGGGCAATGAAAAATGGTGCCATTCCCTGTCCACCAAAGGATAAAGATGGTTGTGGACATGAATGTCTTGAGCTGAAGTGCATATTTTCACAAAATTGGGTTTCAGAATTAAACGAAAAAGTGAAAAGATTAGTCGAAGTGCATGGGCTTGAAGATATGCCTGCAGTCTCTGCACAGTGTACTTCTTGCTTCAAATCACATGGTGACATTGACTCCATCAACAAGAAGTTACGAAAATCTGCCTCTCGAGAAGACTCGAGTGACAACTATTTATATTGTCCTTCAGCTAGTGATGTTAAATGTGGGGATCTGGAACATTTCCAGGGCCATTGGATTAAGGGAGAACCGGTTATTGTTAGGAATGCTCTTGAGTTAACATCTGGCTTGAGCTGGGAGCCAATGGTAATGTGGCGTGCCATGCGTAAATTGACTTATCATGGTTCCAATCATTTGAATGTGAAAGCAATTGACTGCCTAGATTGGTGTGAGGTTGAAATAAACATCCATAAATTTTTCAAGGGATACTCAGAGGGTCGTGCTCATGGTAACTCATGGCCTGAGATGCTCAAGCTCAAAGATTGGCCACCGTCTAATTCATTTGAGCAGAAGTTACCCCGTCATGGTATGGAGTTTATCAGTGCCTTACCCTACAAAGAGTATACACATCCTCACTCTGGTTTTCTTAACATGGCCACAAAGCTGCCAAAGAAATCTTTAAAACCTGACTTGGGGCCTAAGACATATATAGCTTATGGGTTTGCTGAAGAGCTTGGACGTGGAGATTCTGTGACCAAGCTTCATTGTGACATGTCAGACGCGGTAAATATCTTGATGCATACTGAGGAAGTGACCCTCACTTCTCAACATCGCACTAAAATAAAGAAGTTGAAACAACAGTATGCTGATGAAGATATAAGTGAACTTTTTAAGGTTTTACAGGAAGAAAATACTGAGGCTATGTGTAAATCAACATCAGAAGAAAATACTTCATTGCTGGCAATAGAGTGTAAGTGTGATGTTAACATGGTGGGTGTTGAAGCTAAGGAGAAAAGGAGAAGTCTTATTGATCTTGAACATGAAGGTAATAAAGATTTTATCTCTTCTGTTAGTAGGAGAAAGAATGAAGAAGAGCAGGATGTCATTACTAACAAAATAAGAGAAAATTCAGGAATTTCATTGGAAAATGAAGCTTCTGAAGAAGGGAATGTAATTGTTGGGAAGGAAAATATGGTCAAATCACCACATGATTTAGATAAGTCAGAATTATATGCCATGAGTAATGAGTTTCAAATAGAAAACAAGGGAGGAGCTGTCTGGGATATTTTTCGGAGACAAGATGTGCACAAGCTTGAGGAATACCTTAGAAAGCATTGTAAGGAATTCAGGCATATCCGTTGTTCCCATGTGAAGGAGGTTTCTCATCCCATTCATGATCAAGTTTTTTATCTCAATTCTCATCATAAGAGGAAGCTCAAGGAAGAATTTGGAGTTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCTGTCTTTATACCTGCTGGGTGTCCCCATCAAGTTAGAAACTTACAGTCATGCATAAAGGTTGCTCTGGATTTTGTCTCTCCTGAAAATATCTCAGAGTGTGTTCGCCTAACTGAGGAGTTTCGCTCTCTTCACCCAAACCATAGAGCAAAGGAAGATAAACTTGGGGTGAAGAAAATGTGTCTTTGGGCATTGAGCCAGGCTGCAGATGATTTAGAGAAAAGCTCACAAGATGGGTAG 2985 0.4164 MAKRETVVPELEPPDDLRCRRSDGKSWRCRHWRIHNQKYCEEHYLSYRARSFHPIKQRKSTVSASASASAPKDDDDDEEEDERTVHRSSNAKPQADRKKNSKRLREEEVTVSEEKTQKTENKKVEIKAERECSNLKEEKSDGTVLLDRKARIREKIKKTLQLVDDEPEPATRRRSSSTKKEKPSGPGMCHQCQRNDKRVVCCKICNAKRFCVPCIQRWYPHMSEEAIAESCPYCQGNCNCKACLRRKDKITDPGDLGMPLNQDEKIQHLKHLIQSLYPFLEQFNHAQQLEMEIEAKIRGLLLSDLEVNQIDCSQYERIYCNNCKTSIIDFHRSCPNCSYDLCLTCCREIRGYFLQEEIVQQYTDVSNAHLHSGEPLDLQSYKKESSDICLQSSSKNSERPKPKHVWRRAMKNGAIPCPPKDKDGCGHECLELKCIFSQNWVSELNEKVKRLVEVHGLEDMPAVSAQCTSCFKSHGDIDSINKKLRKSASREDSSDNYLYCPSASDVKCGDLEHFQGHWIKGEPVIVRNALELTSGLSWEPMVMWRAMRKLTYHGSNHLNVKAIDCLDWCEVEINIHKFFKGYSEGRAHGNSWPEMLKLKDWPPSNSFEQKLPRHGMEFISALPYKEYTHPHSGFLNMATKLPKKSLKPDLGPKTYIAYGFAEELGRGDSVTKLHCDMSDAVNILMHTEEVTLTSQHRTKIKKLKQQYADEDISELFKVLQEENTEAMCKSTSEENTSLLAIECKCDVNMVGVEAKEKRRSLIDLEHEGNKDFISSVSRRKNEEEQDVITNKIRENSGISLENEASEEGNVIVGKENMVKSPHDLDKSELYAMSNEFQIENKGGAVWDIFRRQDVHKLEEYLRKHCKEFRHIRCSHVKEVSHPIHDQVFYLNSHHKRKLKEEFGVEPWTFIQNLGEAVFIPAGCPHQVRNLQSCIKVALDFVSPENISECVRLTEEFRSLHPNHRAKEDKLGVKKMCLWALSQAADDLEKSSQDG. 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02445 994 MobiDBLite consensus disorder prediction 160 180 - -
Seca6g02445 994 MobiDBLite consensus disorder prediction 160 190 - -
Seca6g02445 994 SMART cupin_9 611 957 IPR003347 -
Seca6g02445 994 Gene3D Cupin 499 966 - -
Seca6g02445 994 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 15 991 IPR045109 GO:0032454|GO:0033169
Seca6g02445 994 MobiDBLite consensus disorder prediction 82 123 - -
Seca6g02445 994 Pfam WRC 14 51 IPR014977 -
Seca6g02445 994 MobiDBLite consensus disorder prediction 56 123 - -
Seca6g02445 994 Pfam JmjC domain, hydroxylase 841 940 IPR003347 -
Seca6g02445 994 FunFam Transcription factor jumonji (JmjC) domain-containing protein 776 966 - -
Seca6g02445 994 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g02445 994 MobiDBLite consensus disorder prediction 1 25 - -
Seca6g02445 994 ProSiteProfiles JmjC domain profile. 630 957 IPR003347 -
Seca6g02445 994 ProSiteProfiles WRC domain profile. 13 58 IPR014977 -
Seca6g02445 994 SUPERFAMILY Clavaminate synthase-like 504 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02445 Seca-Chr6 87153773 87167625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02445 14 72 GRF Transcription Factor Family AT4G37740 39.683 3.85e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca6g02445 JmjC 5.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02445 K15601 - gmx:100808936 976.081