Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02442 ATGATCAAGAAAGGGCGTTTCTTGGAGAACAGAACAACAAAAGTCTACATGAACATGCTCCTACAAGGCCTTTCTCACATCCACCAAAAAGGATTTGTGCATTGTGATCTCAAACCTGATAACATCCTTGTATTCCCAACACATTGGTATCATGATAGCAGATATTATCAACTGAAAATTGCTGACTTTGGATTGGCTGAGACTCTTGAGGAGAAGGTGAACCAAGAAAATTGGAAGTGGAGGTGTAGAGGGACTCCTTTGTTCATGTCACCCGAATCAATTTCCTGTGGCCAAATTGAAGCACCTTTGGACATATGGTCTTTTGGGTGCATAGTTCTTGAGATGCTCACTGGGTACCCTGCATGGAGGGATGAGATGAAAACTGAAGAGGACGTAATGTTTAAGGTTGGCATTATGAAAAAAGTACCAGAGATTCCATTTGGACTGAGTAATGGATGCATTGACTTTTTAAACAAGTGTTTTGCAATAGACCCGTCAAAGATGGACTGCTGA 513 0.4133 MIKKGRFLENRTTKVYMNMLLQGLSHIHQKGFVHCDLKPDNILVFPTHWYHDSRYYQLKIADFGLAETLEEKVNQENWKWRCRGTPLFMSPESISCGQIEAPLDIWSFGCIVLEMLTGYPAWRDEMKTEEDVMFKVGIMKKVPEIPFGLSNGCIDFLNKCFAIDPSKMDC. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02442 170 SMART serkin_6 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02442 170 SUPERFAMILY Protein kinase-like (PK-like) 4 167 IPR011009 -
Seca6g02442 170 Pfam Protein kinase domain 3 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02442 170 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02442 170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 32 44 IPR008271 GO:0004672|GO:0006468
Seca6g02442 170 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 8 167 - -
Seca6g02442 170 Gene3D Transferase(Phosphotransferase) domain 1 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02442 Seca-Chr6 87130141 87130653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02442 5 167 MAP Kinase Kinase Kinase AT5G67080 39.024 3.30e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca6g02442 Pkinase 2.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02442 - - gmx:102664043 176.792