Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02440 ATGCTCCTGCAAGGCCTTTCTCGCATCCACCAAAGAGGATTTGTGCATTGTGATCTCAAACGTGATAACATCCTTGTATTCCCACCACATTGGTATCATGATAGCAGATATTATCAACTGAAAATTGCTGACTTTGGATTGGCTAAGATTCCTGAGGAGAAGGTGAACCAAGAAGATTGGAAGTGGAGGTGTAGAGGGACTCCTTTGTTCATGTCACCCGAATCAATTTCCTGTGGCCAAATTGAATGGTTGAAGATTAAGGTCATTGGAAGTGGCAGCTATGGCACCGTTTACAAAGCTATCGATTCTGCACCAGGAAAAGATTCTCTAAAGCCAATAGCTATAAAGAGTGCACCACTTAGCAAGTCCTATGCATTGTATAGAGAAGGGCAGATTCTAAACTCTTTCATTTGTGCTCCAGAAATTGTTCAATCTCACGGCAATGATATCACCATGGAGAATGGCGAGTGGGTCTACAATCTCCACTTGGAGTATGCCCCTTTTGGCACTCTTGCTGACATGATCAAGAAAGGGCGTTTCTTGGAGAACAAGACAACAAAAGTCTACATGAACATGCTTCTGCAAGGCCTTTCTCGCATCCACCAAAGAGGATTTCTGCATTGTGATCTCAAACCTGATAACATCCTTGTATTCCCACCACATTGGTATCATGATAGTAGATATTATCAACTGAAAATTGCTGACTTTGGATTAGCTAAGACTCCCGAGGAGAAGGTGAACCAAGAAGATTGGAAGTGGAGGTGTAGAGGGACTCCTTTGTTCATGTCACCCGAATCAATTTCTTGTGGCCAAATTGAAGCACCTTTGGACATATGGTCTTTTGGGTGCATAGTTCTTGAGATGCTCACTGGGTACCCTGCATGGAAGAATGAGATGAAAACTGAAGAGGACGTAATATTTAAGGTTGGCATTATGAAAGAAGCACCAGAGATTCCACTTGAACTGAGTAATGGATGCATTGACTTTTTAAACAAGTGTCTTGCACTAGACCCAAGTCAAAGATGGACAGCTGAAAAACTTATGTATCATCCTTATATTCTTTTGGATTTGGAGTAG 1077 0.4197 MLLQGLSRIHQRGFVHCDLKRDNILVFPPHWYHDSRYYQLKIADFGLAKIPEEKVNQEDWKWRCRGTPLFMSPESISCGQIEWLKIKVIGSGSYGTVYKAIDSAPGKDSLKPIAIKSAPLSKSYALYREGQILNSFICAPEIVQSHGNDITMENGEWVYNLHLEYAPFGTLADMIKKGRFLENKTTKVYMNMLLQGLSRIHQRGFLHCDLKPDNILVFPPHWYHDSRYYQLKIADFGLAKTPEEKVNQEDWKWRCRGTPLFMSPESISCGQIEAPLDIWSFGCIVLEMLTGYPAWKNEMKTEEDVIFKVGIMKEAPEIPLELSNGCIDFLNKCLALDPSQRWTAEKLMYHPYILLDLE. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02440 358 SUPERFAMILY Protein kinase-like (PK-like) 83 353 IPR011009 -
Seca6g02440 358 Gene3D Transferase(Phosphotransferase) domain 1 1 84 - -
Seca6g02440 358 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 79 - -
Seca6g02440 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca6g02440 358 SMART serkin_6 83 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02440 358 Pfam Protein kinase domain 85 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02440 358 Pfam Protein kinase domain 2 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02440 358 Gene3D Transferase(Phosphotransferase) domain 1 85 358 - -
Seca6g02440 358 ProSiteProfiles Protein kinase domain profile. 83 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02440 358 SUPERFAMILY Protein kinase-like (PK-like) 2 79 IPR011009 -
Seca6g02440 358 ProSitePatterns Protein kinases ATP-binding region signature. 89 116 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02440 Seca-Chr6 87108567 87114707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02440 2 82 MAP Kinase Kinase Kinase AT4G36950 43.210 4.63e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca6g02440 Pkinase 9.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02440 - - gmx:102667952 265.388