Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02433 ATGGTTAAGTGGTTGAAGATTAAGGTCATTGGAAGTGGCAGCTATGGCACCGTTTACAAAGCTATCGATTCTGCACCAGGAAAAGATTCTCTAAAGCCAATAGCTATAAAGAGTGCACCACTTAGCAAGTCCTATGCATTGTATAGAGAAGGGCAGATTCTAAACTCTTTCATTTGTGCTCCAGAAATTGTTCAATCCCACGGCAATGATATCACCATGGAGAATGGCGAGTGGGTCTACAATCTCCACTTGGAGTATGCCCCTTTTGGCACTCTTGCTGACATGATCAAGAAAGGGCGTTTCTTGGAGAACAGGACAACAAAAGTCTACATGAACATGCTCCTGCAAGGCCTTTCTCGCATCCACCAAAGAGGATTTGTGCATTGTGATCTCAAACCTGATAACATCCTTGTATTCCCACCACATTGGTATCATGATAGCAGATATTATCAACTGAAAATTGCTGACTTTGGATTGGCTAAGACTCCCGAGGAGAAGGGAAAAGATTCTCTAAAGTCAATAGCTATAAAGAGTGCAAAGCTTAGCAAGTCCAATGAATTGTATAGAGAAGGGCATATTCTAAACTCTTTCATTTGTGCTCCAGAAATTGTTCAATCTCACGGCAGTAATGTCACCATGGAGGATGGCGAGTGGGTCTACAATCTCCACTTGGAGTATGCCCCTTTTGGCACTCTTTCTGACATGATCAAGAAAGGGCGTTTCTTGGAGAACAGAACAACAAAAGTCTACATGAACATGCTCCTACAAGGCCTTTCTCGCATCCACCAAAGAGGATTTGTGCATTGTGATCTCAAACCTGATAACATCCTTGTATTCCCACCACATTGGTATCATGATAGTAGATATTATCAACTGAAAATTGCTGACTTTGGATTGGCTAAGACTCCTGAGGAAAAGGTGAACCAAGAAGATTGGAAGTGGAGGTGTAGAGGGACTCCTTTGTTCATGTCACCCGAATCAATTTCCTGTGGCCAAATTGAAGCACCTTTGGACATATGGTCTTTTGGGTGCATAGTTCTTGAGATGCTCACTGGGTACCCTGCATGGAGGGATGGGATGAAAACTGAAGAGGACGTAATGTTTAAGGTTGGCATTATGAAAAAAGTACCGGAGATTCCACTTGGACTGAGTGATGGATGCATTGACTTTTTAAACAAGTGTTTTGCACTAGACCCAAGTCAAAGATGGACCGCTGAAAAGCTTATGTATCATCATTATATTCTTTTGGATTTGGATTAG 1260 0.4214 MVKWLKIKVIGSGSYGTVYKAIDSAPGKDSLKPIAIKSAPLSKSYALYREGQILNSFICAPEIVQSHGNDITMENGEWVYNLHLEYAPFGTLADMIKKGRFLENRTTKVYMNMLLQGLSRIHQRGFVHCDLKPDNILVFPPHWYHDSRYYQLKIADFGLAKTPEEKGKDSLKSIAIKSAKLSKSNELYREGHILNSFICAPEIVQSHGSNVTMEDGEWVYNLHLEYAPFGTLSDMIKKGRFLENRTTKVYMNMLLQGLSRIHQRGFVHCDLKPDNILVFPPHWYHDSRYYQLKIADFGLAKTPEEKVNQEDWKWRCRGTPLFMSPESISCGQIEAPLDIWSFGCIVLEMLTGYPAWRDGMKTEEDVMFKVGIMKKVPEIPLGLSDGCIDFLNKCFALDPSQRWTAEKLMYHHYILLDLD. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02433 419 SUPERFAMILY Protein kinase-like (PK-like) 4 163 IPR011009 -
Seca6g02433 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Seca6g02433 419 SMART serkin_6 4 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02433 419 Pfam Protein kinase domain 171 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02433 419 Pfam Protein kinase domain 6 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02433 419 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 172 414 - -
Seca6g02433 419 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Seca6g02433 419 CDD PKc 10 161 - -
Seca6g02433 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Seca6g02433 419 ProSiteProfiles Protein kinase domain profile. 4 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02433 419 Gene3D Transferase(Phosphotransferase) domain 1 2 172 - -
Seca6g02433 419 Gene3D Transferase(Phosphotransferase) domain 1 173 419 - -
Seca6g02433 419 SUPERFAMILY Protein kinase-like (PK-like) 172 414 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02433 Seca-Chr6 87075004 87082146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02433 142 417 MAP Kinase Kinase Kinase AT4G36950 37.143 4.47e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca6g02433 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02433 - - gmx:102667952 239.195