Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02424 ATGAAGCTTTCAACATCAGGGTTGGGTCAGGAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCTTGCGCGGGCCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTAGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCTACAACTAACAGAGAAGTTGATGGGCACATACCCAATTACCCCAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATCCCAAGTAAGCAGCCCTCAAATTACTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCTCAACAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCACGACGTTGAATGGAAGTTTAGACATATTTTTCGGGGGCAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAACCGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGCTACATCATGGGCAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGAATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGATACATGGGTACAATAACGGGCATAAGTGATCTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGGTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTGTCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTATGCATGATGGCAGAGATGAAACAACTAATGGACTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTTAATTCCCTAAATTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACCTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCCGAACCTAGGTAGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAGCCTTTCCATTATCTTCAACAATCTGGAAACAATAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGTACTGACAGAGAACCTGTCTCATCACCTACTTCAGAAATCACATAACAATCAAGAAGTCCAACCACAACAGCAGCAACATACTTATCAAGATACACTTCTAATTCAAAGTGAACAGCCCCATCAGAGACAACACACCAGTGTGCCTTCACCATCATATTCCAAACAAGATTTCTTGGATTCAAGCATAAAGTTCCCCGCTTCAGTTTCCCCCGAACAAAACATGCTTAGTTCACTTTGTCATGAAGGAAGTGGCAGTCTCTTGAATTTATCCAGAAGCGGTCAGTCCTTGCTGGCTGAACAGTTACCCCAACAGCCATGGACTGCAAAGTATGCTCCTGAGCAGGTCAATACCTTCAGCAGCGCAGTGTCACATGCACAATATTCTGGAAAAGATTCTGCTGTGGTGCCACCACATTGTAATTCAGATGCCCAAAATTCTACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTACTCCCTACCACTGTTCCTGGTTACACCACTTCATCAGCTGATACTGATCCATCAACAATGCCATTAGGGGAGTCTGGGTTCCAGAGTTCTTTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAGAGTGCAGGGCAAGTTGACCCTCAAAACCAGACTCGAACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCCAGGTTCAGCAGCTATCATGAGCTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTACAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGACGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCGGTAGAATCGCTTGCTCAAAGTTCAGGACAAAGGCTAAATGGCACTGCTGTGGAGTCTCACCACATTGTCTCTGGACCACCATCAATTGGCTCCCTTGAATACTAA 2547 0.4523 MKLSTSGLGQEGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPSYIMGRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSMHDGRDETTNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLPNLGSGYLMRPQMMNFQQPFHYLQQSGNNNSPLQLQQQQAIQQSVSSNMLQPQAQVLTENLSHHLLQKSHNNQEVQPQQQQHTYQDTLLIQSEQPHQRQHTSVPSPSYSKQDFLDSSIKFPASVSPEQNMLSSLCHEGSGSLLNLSRSGQSLLAEQLPQQPWTAKYAPEQVNTFSSAVSHAQYSGKDSAVVPPHCNSDAQNSTLFGVNIDSSGLLLPTTVPGYTTSSADTDPSTMPLGESGFQSSLYACMQDSSELLQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLQDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLAQSSGQRLNGTAVESHHIVSGPPSIGSLEY. 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02424 848 FunFam Auxin response factor 126 230 - -
Seca6g02424 848 SUPERFAMILY CAD & PB1 domains 720 796 - -
Seca6g02424 848 Gene3D - 718 811 - -
Seca6g02424 848 ProSiteProfiles PB1 domain profile. 722 806 IPR000270 GO:0005515
Seca6g02424 848 Pfam AUX/IAA family 716 806 IPR033389 -
Seca6g02424 848 SMART B3_2 128 230 IPR003340 GO:0003677
Seca6g02424 848 MobiDBLite consensus disorder prediction 829 848 - -
Seca6g02424 848 Pfam Auxin response factor 254 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca6g02424 848 FunFam Auxin response factor 297 369 - -
Seca6g02424 848 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Seca6g02424 848 Gene3D - 126 229 IPR015300 -
Seca6g02424 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 811 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca6g02424 848 CDD B3_DNA 127 228 IPR003340 GO:0003677
Seca6g02424 848 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Seca6g02424 848 FunFam Auxin response factor 717 811 - -
Seca6g02424 848 MobiDBLite consensus disorder prediction 475 499 - -
Seca6g02424 848 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Seca6g02424 848 Gene3D - 297 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02424 Seca-Chr6 86967320 86992188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02424 98 814 B3 DNA Binding Superfamily AT5G37020 68.088 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca6g02424 AUX_IAA 5.2e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02424 - - gmx:100784373 1527.3