Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02423 ATGCAGCAACTTAAGCTTCTAGCCTTAACCCTGTTCATGTTGTGGTTATGTCACTGTGCACTAGCAGACCCTCAAATCCGTTTACTCAACAAGGGTTGCAGCCAATACAACGCAACTAACTTGAGAAGCTTCTACCAAAATCTAAACGCAACTTTGGCAGACTTGAAAGCACAAGTGAGCAACCAAAGCAAACACTTTGCCACAGCACAACAAGCCAGGGGAGCAGACCCTGTCTATGCTATGTTTCAATGCAGAAACTACCTCTCCAACAATGACTGTGCCGCCTGCTTCACCGCCGCCGCAGCACAAATCCGCAACTGCTCCGCCGGAGCCAATGGTGCCCGTGTCATTTATGATGGTTGCTTACTTAGGTACGAGAGCAATGGCTTCTTCAACCAAACTACTCTGCCTGGAAATAGTATGATTTGTGGAAATGAAACTACAAAAGAAGCCACCGCTTTTGGTGCAAGTGCACAACAAGTGCTAATGGATCTACAAATAGCAACACCCAAAATTACTGGTTTCTTTGCAGCTACCAAGACATCATTGGCTAATGGTTCAATCTATGCCATTGCACAATGTGCTGAAACTGTCTCAGAAAGTGGTTGTTTGGATTGTTTAACAGTTGGATACAACAACATAAAAAGTTGTTTTCCTAATACAGATGGTAGAGCATATGATGCTGGGTGTTTTATGAGATATTCAGACACATCATTCTTTGCTGACAACCAAACCATTGACATCACACCCTTATTAAAACAAGGGGGTTCAAGCAAGAAGGGGGCCATTATTGGGGGTGTTGTTGGAGGTGTAGGTCTTGTTGTGATCCTCCTTGCATTATTTGTTTGGCTTAAGCAATACAAGAAACCAAAGAGGATTCCTAGAGGTGACATATTGGGAGCAACTGAGTTGAGAGGTCCAGTTATCTACAGCTATAAAGATTTGAAGTCTGCAACAAAAAATTTTAGTGATGAAAATAAACTAGGAGAAGGAGGATTTGGAGATGTATATAAGGGCACTCTGAAAAATGGTAAAATCGTGGCAGTCAAGAAATTAATTTTAGGCCAATCCAGTAAGATGGATGAACACTTTGAAAGTGAAGTCAAGCTTATAAGCAATGTTCATCATAGGAATCTAGTTCGACTTCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAACAGCAGCCTTGATAGATTCTTATTTGGTGAAAAGAAAGGTTCTCTTAATTGGAAATACCGATATGACATAATCTTAGGCACAGCAAGGGGTTTAGCCTATTTACATGAGGATTTCCATGTTTGCATCATACATAGAGATATAAAGACTAGCAATATCCTCTTGGATGATGATCTTCAGCCTAGAATTGCTGATTTTGGGTTGGCAAGACTTTTACCACAGGACCAATCTCATGTTAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGCTATCAGAGAAGGCTGATACCTACAGCTTTGGTGTTGTAGTCCTGGAAATTGTAAGTGGCCAAAAGAGCAGTGAAATGAGAGCTGATGCTGATGGGGAATTCCTCCTTCAAAGGGCATGGAAACTATATGAGGAAGATATGCACTTGGAGTTGGTTGACAAGACGTTGAATGTTGATGAATATGATGCAGAAGAAGTGAAGAAAATTATAGAAATTGCTTTATTGTGCACTCAAGCATCGGCTGCTGCAAGGCCAACAATGTCTGAAATAGTAGTACTACTCAAAAGCAAGAACTTATTGGAGCATATGAAGCCCACCATGCCTGTCTTTGTTGAATCTAATGTTAGGCCCCGGACAGACACCTCTACCTCAACTGTAGTTGCAGCCCCACAGACAACAATTCTACTGAACCAGGGATGCAGCACATACAACGCATCCAACTTGCGTAGCTTCTTTGCTAACATCAACGAAACGTTTTCAGAGATGAGAGCAGAGGTTAGCAATCAAAGCAAGCACTTTGCCACAGCACAAGAAGCCAGGGGGGAGGTAATCACATATGCTATGTTTCAATGCAGAAACTACCTCTCCAAAAATGACTGTCTTGCTTGCTTCACCACCGCAACTACCCAAATCCGCAACTGTTCCGCTGGCAACGGTGCCAGAGTCATCTACGATGGCTGCTTCCTCAGGTATGAGAGTGAGAGGTTCTACGATCAAACCAATCAACCTGGCGCTGGTGTATCATGTGGGAACAAGACTGCCAAGGGAGCCTCTGCTTTTACAACAGTTGGACAACAAGTGTTACTAGACCTCCAAGCAGCAACACCCAAAATTAAAGGCTTTTATGCAGCTACAAAGACACAAGTGGCTGGTGGTGGTGCAATTTATGCCATTGCACAATGTGTTGAAACTGCCACAGAGAGTACTTGTCTCAATTGCATGACAGTTGGTTACAACAATTTGCAGACTTGTCTTCCTAATACAGATGGTAGAGCATTTGATGCTGGGTGTTTTATGAGATACTCAGAGACACCTTTCTTTGCTGATAACCAGACCATTGATATCACACCCTATTTAAAACAAGGAGGTTCAAGCAAGAAATGGGCCATTATAGGTGGTGTTGTTGGAGGTGTAGGTCTTCTTGTGATCCTTCTTGCAATTTTTGCCTGGCAAAGATCCAGAAAACCCAAGAGGGCTCCTAGAGGTGATATATTGGGAGCAACCGAGTTGAAAGGTCCAGTAAACTACAAGTATAGCGATCTGAAAGCTGCAACAAAGAATTTTAGTAATGAAAATAAACTAGGAGAAGGAGGCTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTAGTTGCAGTGAAGAAATTAGTTTTGGGGAAATCCAGCAAGATGGAGGATGATTTTGAAAGTGAAGTTAAGCTTATAAGTAATGTTCATCATCGGAATCTAGTTAGACTTCTTGGTTGTTGTAGTAAAGGCCAAGAGAGAATCCTAGTTTATGAATACATGGCAAATAGCAGCCTTGACAAATTCCTATTTGGTAACAAAAAGGGTTCCCTCAACTGGAAACAACGCTATGATATAATTTTAGGCACAGCTAGGGGATTGGCCTACCTACATGAGGAATTCCATATCTCCATTATACATAGAGATATTAAGACTAGTAATATCCTCCTAGATGATAATCTTCAGCCCAAAATTGCTGATTTTGGATTGGCACGACTTTTGCCTGAGGATCGTTCTCATCTAAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAAAAGGCTGATGCCTACAGCTATGGTATTGTAGTCCTAGAAATCATAAGTGGTCAAAAGAGCACTGAAGTGAAGGTTGATGATGATGTTCATGAATACCTTCTTCAACGAGCATGGAAACTACATGAGAGAGGCATGCATTTGGAGCTGGTGGACAAGGCCTTAGACCCTGATGACTATAATGGAGAAGAAGTGAAGAAAACCATAGAGATTGCTTTACTATGCACTCAAGCATCAGCTACAACAAGGCCAACAATGTCTGAAGTAGTAGTCTTACTCCAAAGCAAGAACTTACTGGAGCACCTGCATCCAACTATGCCTGTGTTTGTTGAAACGAATCTCAAGGCTCAAGAAGGCAATTCTACATCAACTGGCACTGCTTCTTCTACATCCAATGCTACTGCCTCCATTTCTATTCTATCAGCCCGATGA 3750 0.4197 MQQLKLLALTLFMLWLCHCALADPQIRLLNKGCSQYNATNLRSFYQNLNATLADLKAQVSNQSKHFATAQQARGADPVYAMFQCRNYLSNNDCAACFTAAAAQIRNCSAGANGARVIYDGCLLRYESNGFFNQTTLPGNSMICGNETTKEATAFGASAQQVLMDLQIATPKITGFFAATKTSLANGSIYAIAQCAETVSESGCLDCLTVGYNNIKSCFPNTDGRAYDAGCFMRYSDTSFFADNQTIDITPLLKQGGSSKKGAIIGGVVGGVGLVVILLALFVWLKQYKKPKRIPRGDILGATELRGPVIYSYKDLKSATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGQSSKMDEHFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGEKKGSLNWKYRYDIILGTARGLAYLHEDFHVCIIHRDIKTSNILLDDDLQPRIADFGLARLLPQDQSHVSTKFAGTLGYTAPEYAIHGQLSEKADTYSFGVVVLEIVSGQKSSEMRADADGEFLLQRAWKLYEEDMHLELVDKTLNVDEYDAEEVKKIIEIALLCTQASAAARPTMSEIVVLLKSKNLLEHMKPTMPVFVESNVRPRTDTSTSTVVAAPQTTILLNQGCSTYNASNLRSFFANINETFSEMRAEVSNQSKHFATAQEARGEVITYAMFQCRNYLSKNDCLACFTTATTQIRNCSAGNGARVIYDGCFLRYESERFYDQTNQPGAGVSCGNKTAKGASAFTTVGQQVLLDLQAATPKIKGFYAATKTQVAGGGAIYAIAQCVETATESTCLNCMTVGYNNLQTCLPNTDGRAFDAGCFMRYSETPFFADNQTIDITPYLKQGGSSKKWAIIGGVVGGVGLLVILLAIFAWQRSRKPKRAPRGDILGATELKGPVNYKYSDLKAATKNFSNENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSKMEDDFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGNKKGSLNWKQRYDIILGTARGLAYLHEEFHISIIHRDIKTSNILLDDNLQPKIADFGLARLLPEDRSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSYGIVVLEIISGQKSTEVKVDDDVHEYLLQRAWKLHERGMHLELVDKALDPDDYNGEEVKKTIEIALLCTQASATTRPTMSEVVVLLQSKNLLEHLHPTMPVFVETNLKAQEGNSTSTGTASSTSNATASISILSAR. 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02423 1249 Pfam Protein kinase domain 323 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02423 1249 Pfam Protein kinase domain 928 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02423 1249 MobiDBLite consensus disorder prediction 1225 1249 - -
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 743 845 - -
Seca6g02423 1249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1048 1060 IPR008271 GO:0004672|GO:0006468
Seca6g02423 1249 Gene3D Transferase(Phosphotransferase) domain 1 1004 1209 - -
Seca6g02423 1249 Gene3D Transferase(Phosphotransferase) domain 1 399 606 - -
Seca6g02423 1249 Pfam Salt stress response/antifungal 748 842 IPR002902 -
Seca6g02423 1249 Pfam Salt stress response/antifungal 639 732 IPR002902 -
Seca6g02423 1249 Pfam Salt stress response/antifungal 143 236 IPR002902 -
Seca6g02423 1249 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Seca6g02423 1249 ProSiteProfiles Gnk2-homologous domain profile. 632 735 IPR002902 -
Seca6g02423 1249 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 685 1237 - -
Seca6g02423 1249 CDD STKc_IRAK 933 1200 - -
Seca6g02423 1249 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 892 1003 - -
Seca6g02423 1249 ProSiteProfiles Protein kinase domain profile. 322 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02423 1249 ProSiteProfiles Gnk2-homologous domain profile. 136 239 IPR002902 -
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 1004 1207 - -
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 287 398 - -
Seca6g02423 1249 ProSitePatterns Protein kinases ATP-binding region signature. 933 956 IPR017441 GO:0005524
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 138 239 - -
Seca6g02423 1249 SMART serkin_6 927 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02423 1249 SMART serkin_6 322 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02423 1249 Coils Coil 45 65 - -
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 631 735 - -
Seca6g02423 1249 Gene3D - 139 239 IPR038408 -
Seca6g02423 1249 Gene3D - 744 845 IPR038408 -
Seca6g02423 1249 Gene3D - 25 130 IPR038408 -
Seca6g02423 1249 Gene3D - 631 735 IPR038408 -
Seca6g02423 1249 Gene3D Phosphorylase Kinase; domain 1 300 398 - -
Seca6g02423 1249 Gene3D Phosphorylase Kinase; domain 1 897 1003 - -
Seca6g02423 1249 CDD STKc_IRAK 328 594 - -
Seca6g02423 1249 ProSitePatterns Protein kinases ATP-binding region signature. 328 351 IPR017441 GO:0005524
Seca6g02423 1249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Seca6g02423 1249 ProSiteProfiles Protein kinase domain profile. 927 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02423 1249 SUPERFAMILY Protein kinase-like (PK-like) 306 623 IPR011009 -
Seca6g02423 1249 SUPERFAMILY Protein kinase-like (PK-like) 912 1213 IPR011009 -
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 399 601 - -
Seca6g02423 1249 ProSiteProfiles Gnk2-homologous domain profile. 741 845 IPR002902 -
Seca6g02423 1249 FunFam Cysteine-rich receptor-like protein kinase 2 25 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02423 Seca-Chr6 86878656 86899014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02423 4 621 Receptor kinase-like Gene Family AT1G70520 37.679 7.38e-124 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g02423 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02423 - - vra:106775622 1877.06