Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02422 ATGTTGTGGTCATGGAGAAACTTTCATGGTGCACTAGCAGATCCTCAAATCCGTTTACTCAACAAAGGTTGCAGCCAATACAACGCCACCGACTTGTATGAGAGCAATGGCTTTTTCGACCAAACCACTTTACCCGGCAACAGTATGATTTGTGGAAATCAAACTGCAAATGGAGCCACTGCTTTTAGTACAAGTGCACAACAAGTGCTAATGGATCTACAAACAGCAACACCCAAGATTCCTGGTTTCTTTGCAGCTACTAAGACACCAGTGGCTAGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGTCACAGAAAGTGGTTGTTTGGATTGTTTAACAGTTGGATACAACAACATAGAGAGTTGTTTTCCTAATACAGATGGTAGAGCATTTGATGCAGGATGTTTTATGAGTTCAAGCAAGAAAGGGGCCATTATTGGTGGTGTTGTTGGAGGTGTAGGTCTTGTTTTGATCATCCTTGCACTGTTTGTATGGCTTAGGCGATACAAGAAACCCAAGAGGCTTCCTAGAGGTGACTTATTGGGAGCAACTGAATTGAAAGGTCCAGTTATCTACAGCTATAAAGATTTGAAGTCTGCAACAAAAAGTTTTAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATATAAGGGCACTCTGAAAAATGGTAAAGTAGTTGCAGTCAAGAAATTAATTTTACGCCAATCCAGCAAGATGGATGAACAATTTGAAAGTGAAGTCAAGCTTATAAGTAATGTTCATCATAGGAATCTAGTGAGACTCCTTGGATGTTGCAGTAAAGGCCAAGAGAGAATCCTTGTCTATGAATACATGGCAAACAGTAGCTTGGACAGATTCTTATTTGGTGAAAAGAAAGGTTCTCTCAACTGGAAACAACGGTATGATATAATTTTAGGCACAGCAAGGGGTCTAGCCTATCTACATGAGGATTTCCATGTTTGCATCATACACAGAGATATAAAGACTAACAATATCCTCTTAGATGATGATCTTCAGCCTAGAATTGCTGACTTTGGGTTGGCAAGACTTTTACCAGAGGACCAATCTCATCTTAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGCTATCAGAGAAAGCTGATACCTACAGCTTTGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGTAGTGAATTGAGGGCTGATGCTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTGTATGAGGGAGGTATGCACTTGGAGTTGGTTGACAAGACATTGAACCCTGATGACTATGATGCAGAAGAAGTGAAGAAAGTTATAGAGATTGCTTTATTGTGTACTCAAGCATCAGCAGCTGCAAGGCCAACAATGTCTGAAATAGTAGTACTACTCAAAAGCAAGAACTTATTGGAGCATATGAAGCCATCCATGCCTGTCTTTGTTGAATCTAATGTTAGGCCTCGGACAGACACTTCTACCTCAACTGGTTCTTCTACATCTACTGCTACTGCTTCTACTTCTATACTATCAGCTCGATGA 1581 0.408 MLWSWRNFHGALADPQIRLLNKGCSQYNATDLYESNGFFDQTTLPGNSMICGNQTANGATAFSTSAQQVLMDLQTATPKIPGFFAATKTPVASGAIYAIAQCAETVTESGCLDCLTVGYNNIESCFPNTDGRAFDAGCFMSSSKKGAIIGGVVGGVGLVLIILALFVWLRRYKKPKRLPRGDLLGATELKGPVIYSYKDLKSATKSFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLILRQSSKMDEQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGEKKGSLNWKQRYDIILGTARGLAYLHEDFHVCIIHRDIKTNNILLDDDLQPRIADFGLARLLPEDQSHLSTKFAGTLGYTAPEYAIHGQLSEKADTYSFGVVVLEIISGQKSSELRADADGEFLLQRAWKLYEGGMHLELVDKTLNPDDYDAEEVKKVIEIALLCTQASAAARPTMSEIVVLLKSKNLLEHMKPSMPVFVESNVRPRTDTSTSTGSSTSTATASTSILSAR. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02422 526 CDD STKc_IRAK 213 479 - -
Seca6g02422 526 Gene3D - 47 145 IPR038408 -
Seca6g02422 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
Seca6g02422 526 Gene3D Transferase(Phosphotransferase) domain 1 284 491 - -
Seca6g02422 526 SMART serkin_6 207 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02422 526 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 23 515 - -
Seca6g02422 526 FunFam Cysteine-rich receptor-like protein kinase 2 46 146 - -
Seca6g02422 526 Pfam Protein tyrosine and serine/threonine kinase 210 477 IPR001245 GO:0004672|GO:0006468
Seca6g02422 526 ProSitePatterns Protein kinases ATP-binding region signature. 213 236 IPR017441 GO:0005524
Seca6g02422 526 Gene3D Phosphorylase Kinase; domain 1 185 283 - -
Seca6g02422 526 Pfam Salt stress response/antifungal 51 143 IPR002902 -
Seca6g02422 526 FunFam Cysteine-rich receptor-like protein kinase 2 284 486 - -
Seca6g02422 526 SUPERFAMILY Protein kinase-like (PK-like) 191 511 IPR011009 -
Seca6g02422 526 MobiDBLite consensus disorder prediction 498 526 - -
Seca6g02422 526 MobiDBLite consensus disorder prediction 499 526 - -
Seca6g02422 526 ProSiteProfiles Gnk2-homologous domain profile. 44 147 IPR002902 -
Seca6g02422 526 FunFam Cysteine-rich receptor-like protein kinase 2 172 283 - -
Seca6g02422 526 ProSiteProfiles Protein kinase domain profile. 207 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02422 Seca-Chr6 86864390 86870426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02422 34 526 Receptor kinase-like Gene Family AT1G70520 38.432 2.73e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g02422 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02422 - - gmx:100813585 785.023