Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02416 ATGGCCCCTTCTTTAGAATTCAATGGTGAAGACAATAATGTTATATTAGGAGGACACACCCAACAGGATGATGGCGTTAATTTAGCCATACAATGGGTAAGTTCAATTGTGTTTCCCTTGACTTTGCAGGCAGTGACCGAGCTGGGTATATTTGATATCATAGCCAAATCTGGTGAAGGTGCCAAACTCTCTGCAAATGACATTGCATCTCAAATTGGCACCAACAACCCAGAAGCACCCATAATGCTTGATCGTCTACTTAGGTATTTGGCTAGTTACTCTGTGTTACATTGCTCTATCCTTCAAGATACACAAAGGCTTGGATCAGGATCACCTCAACGTCTCTATAGCCTCACCCCTGCTTCCAAATATTTTTTGACTGATGCTGATGGTGTCTCACTTGGCCCCTTCTTGGCCTTGCTTATGGACAAGGTCCCCTCTCAAAGCTGGTCAGTTTACTTTTATGTTATGTCTTTATTAATCACTAGAAGCACAAAAAATTCATCTTTTTTTAATATAAATTATTATATTATTAATTTGATTAATATGTTTTTTTATCATAACTATAAAACTTGTAGGACCAAACTAAAAGAAGTGATCCTAGAAGGCGGTGTAGCATTCAAGAGGGTGTATGGCATGCATCTCTTTGAGTACACAAGGGTAGATACTGGGTTTAATGATGTTTTCAACAAAGGTATGCTTAGCTCCACCACAGTGACTATGAAGACGATTCTTGAACTCTACACTGGTTTTGAGCACATTAATAGATTGGTGGATGTTGGTGGTGGTCTTGGGGTCAATCTCAAATTGATCACTTCCAAATACCCTCATATCCAAGGTGTTAATTTTGACCTGCCTCATGTCATTGAACAGGCTCCTTCCTATGTTGGCGTGGAGCATGTAGGGGGAGATATGTTTGAGGGCGTACCTGAAGGAGATGCCATTTTTATGAAGTGGATTCTTCATGATTGGGGTGATGAACACTGCGTAAAGCTCTTGAAGAATTGTTATAAAGCTATTCCCGGTGATGGAAAGGTTATTATCGTGGACACGATCCTTCCCAATGTACCTCAAACAACAACAACAACCAAAAATGCTTTCACATATGACCTTTTCATGTTGGCTCAATTTCCAGGAGGGAAGGAGCGAACCCAACAAGAATTCATGGAGTTGGCAACGAAATCTGGATTTAGTGGCATCAAAATCGTATGCTGTGCTGCTAGCTTTTGGGTTATGGAGCTTTTTAAGTAG 1251 0.4037 MAPSLEFNGEDNNVILGGHTQQDDGVNLAIQWVSSIVFPLTLQAVTELGIFDIIAKSGEGAKLSANDIASQIGTNNPEAPIMLDRLLRYLASYSVLHCSILQDTQRLGSGSPQRLYSLTPASKYFLTDADGVSLGPFLALLMDKVPSQSWSVYFYVMSLLITRSTKNSSFFNINYYIINLINMFFYHNYKTCRTKLKEVILEGGVAFKRVYGMHLFEYTRVDTGFNDVFNKGMLSSTTVTMKTILELYTGFEHINRLVDVGGGLGVNLKLITSKYPHIQGVNFDLPHVIEQAPSYVGVEHVGGDMFEGVPEGDAIFMKWILHDWGDEHCVKLLKNCYKAIPGDGKVIIVDTILPNVPQTTTTTKNAFTYDLFMLAQFPGGKERTQQEFMELATKSGFSGIKIVCCAASFWVMELFK. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02416 416 Gene3D - 193 244 IPR036388 -
Seca6g02416 416 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Seca6g02416 416 Gene3D Vaccinia Virus protein VP39 226 406 IPR029063 -
Seca6g02416 416 FunFam Caffeic acid 3-O-methyltransferase 10 125 - -
Seca6g02416 416 SUPERFAMILY "Winged helix" DNA-binding domain 23 128 IPR036390 -
Seca6g02416 416 Pfam O-methyltransferase domain 195 398 IPR001077 GO:0008171
Seca6g02416 416 PANTHER O-METHYLTRANSFERASE 33 397 IPR016461 GO:0008168
Seca6g02416 416 Gene3D - 35 157 IPR036388 -
Seca6g02416 416 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 176 413 IPR029063 -
Seca6g02416 416 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 416 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02416 Seca-Chr6 86792610 86795298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02416 22 416 Monolignol Biosynthesis Gene Families AT5G54160 47.595 1.36e-128 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02416 K13066 - gmx:100789402 465.307