Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02401 ATGGCAATTCAAGATCAAAATGGATTTACTAGACCAAGGGTTGGTCCTCCAGTAGGAAATGGAGTATCTTTGAGTTCTGGACAACATTCTGTTGCACATATTCAACTTAATGATCAGTTTTCTTGCGGGAATGACTATGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGATGGACAGATGAAGAGCATAAGAAGTTCCTTGAAGCTTTAAAGCTCCATGGCCGGGCCTGGCGACGCATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACTCTAGTGGGAAAATTACAAACACTGAGGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAACCGTTGCATCCTTACCCTCGTAAGCTAGCTGAGACCCCTAATAAAGACTTTTCGATCCCAGAAGAGCTGATGAAGTCTAATTCTCTGAAGTCATCAGATTTTGATCAAGACAACCAATCTCCCAAATCAGTGTTATCTACAGTTGGTTCAGACAGCCTTGGATCCTCTGATTCAGATACACCAAATGGAAGTTTATCTCCAATGTCATCCATTAGTGGTGTCCATACAAGTGGTTTTACACTTGCTGAACCCAAAACACCATCTGAGGAAGCTGCATTAAATGCTGATTCAGCTCATGATGAGAAACCTCTTATGAAGTTCGAGGTTCTCCCCAATGGAAGTGTTTCAGTCAAGGAAGACACATCAGAAGAATCATCTGGTCGAACTCTCAAACTTTTTGGGATGACTCTATTTGTAAATGATACCTGCAGATCATCATTTCCTCCAACAATTGAGGCATGCAAACCAATACCTTTAACCATAGGTGTGCATTGCCTTAGCAAGGAGGATGAGAAATTGCAACTTGTTGGCCAGAGTACACCAAGTGAAACACCAGCCACATCCAAACTAAGGGTGAGAGTGAGACCTGAAACATGTGGGAAAGGGTTTGTTCCATATAAAAGGTGCACCCCAGAGAAAGGGAACCAGTCTTTATCAGTAACAGCTTATGAGAGAGAAGAGCAACGCATTCACCTTTCCTTATAG 1104 0.4203 MAIQDQNGFTRPRVGPPVGNGVSLSSGQHSVAHIQLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSSGKITNTEESIEIPPPRPKRKPLHPYPRKLAETPNKDFSIPEELMKSNSLKSSDFDQDNQSPKSVLSTVGSDSLGSSDSDTPNGSLSPMSSISGVHTSGFTLAEPKTPSEEAALNADSAHDEKPLMKFEVLPNGSVSVKEDTSEESSGRTLKLFGMTLFVNDTCRSSFPPTIEACKPIPLTIGVHCLSKEDEKLQLVGQSTPSETPATSKLRVRVRPETCGKGFVPYKRCTPEKGNQSLSVTAYEREEQRIHLSL. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02401 367 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Seca6g02401 367 PANTHER SWI/SNF COMPLEX-RELATED 43 287 - -
Seca6g02401 367 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Seca6g02401 367 MobiDBLite consensus disorder prediction 125 143 - -
Seca6g02401 367 SMART sant 59 107 IPR001005 -
Seca6g02401 367 MobiDBLite consensus disorder prediction 157 215 - -
Seca6g02401 367 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Seca6g02401 367 MobiDBLite consensus disorder prediction 1 24 - -
Seca6g02401 367 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Seca6g02401 367 MobiDBLite consensus disorder prediction 117 215 - -
Seca6g02401 367 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Seca6g02401 367 Gene3D - 62 108 - -
Seca6g02401 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Seca6g02401 367 CDD SANT 62 105 IPR001005 -
Seca6g02401 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02401 Seca-Chr6 86453943 86457788 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g02401 Myb_DNA-binding 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02401 - - gmx:780539 534.258