Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02395 ATGACAATGGGAGGAGGAGAACAGTCCTTGGCACCACTCCCATTTGACAGAACTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTAAAGTGTGGTCGCAGAGGAAAGCCAAAGCTTTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTACTCAGGCCAGCAGGAAAAACATTTGCGATTGAGTGCAGTTACAAAAATTATTCAAGGGCAGGGAAATATAAGGTCCCAGAGGCAAAATGAACCTGAAAAGGAGTGTCATTCATTTTCACTAATCTATGCTAATGGAGAACGATCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGCCAGCATCCTAGAACTTTTAGTAGTTTAAGAAGTTGTAAAGGGGTGCAAAGTTGTGTCAGTAGTCCAGCTGGAATATTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGATAACTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTGTCATATACATCTGATAACATTTATTCATCTGCATCTTTCCTCTCCAGCACTCATGGCATAACAGATTCAGTCCCAAGTTCTCCATATATTGATTCAGATATTCATAGAAAGATTGAGTCAACACGTGTTGACAAGGAACACAAGAATTTGTCCTACAGGTCTCTGATGCCTCCTACCTCCCCACATGTAGGAAATAACAATGTATTAAAAGATGTAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATTGTAAATGAAAGGTTTGTCCAAAATGGAATTTATTCTTTAGTGCCAAAGTTACTGGAATCCACTGCAATGTTAGATGTACAAAATATAGCCTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGACAAGGGAAATGGGGAAGGCTGGGGCAAAAAATTGATATGGACATTAGCTCTCCCAAAGTAGTTGATTCTCTTAGTGGTATTCATGTAAAACATGTTGCTTGTGGTGAGTATCATACAAGTGCTTTGACAGATTCTGGTGAAGTATATACATGGGGGAATGATGTTTGTTGTTCAGATTTAGTTGATGAAGGTAGAATTAGAAGTCAGTGGATACCACATAAACTTTCTGGACCTTTAGATGGTATTAGTATTTCAAGTGTTGCTTGTGGGGAATGGCACACTGCACTTGTCTCTAGCTGTGGACGGTTATTTACATATGGAGATGGTACATTTGGAGTACTAGGTCATGGGGATCTTCGGAGCTCTTCTAGACCAAAAGAAGTTGAATCTCTTAGTGGTCTAATGGTGAGGTCTGTTGCTTGTGGATCATGGCACACGGCTGCTATTGTTGAAGTCATGTTTGATCGTTTTAGGTACAATACTCCTACTGGTAAGCTTTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAAGCTTGTACCAACATGTGTTGCACAACTTGTTGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAACATGGGGAAGGTTTTTGCAATGGGAAGTGCTAAATATGGACAGCTTGGAAATCCACATGCAAGGGATAAAGCAGTTATGGTTGAAGGACAACTTAAGCAAGAGTTTGTTAAAGTGATATCATCTGGTTCATATCATGTTGCTGTTTTGACATCTGCAGGGAGTGTGTATACATGGGGCAAAGGTGAAAATGGGCAATTGGGGCTAGGTGATACTGAAGACAGACATGTACCTTGTTTTGTTGAGGCTCTAAGAGACAGGCAGGTAGATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATATGTTTGCACAGACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGAAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTATAAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTTTGAAAGACAACAAGGAAGTACACATTCAGCTATGTCATCAAAGTCTAGAAATTACAATACTCAGCAGATATTGAAGCATCAAAACAAGATTGGTGATCTCACTGAAGATAGGGGAGAAACAACTGTGACACAAGGTCCTCTATTGTCTCTCAGTCAATCATGTTACAGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCATGATTTAGAAGATGGTTCTTATAGGTTAGGTGGAATGCCACAATGTGGGAAAGTTCCCTGCCCTGTCCTATTTAAAAACAATAGTACAGAAAATTCAGCTGTGCATGTTTCTTCATCCAAAAATAAATTAGCTTCTGTTTCACCACTGAATGTAGAATCTACAGAATACAACTTCCCCAATGCAGAGACAGATACAATAAAGTCTGAGAAGATGCTCATAGAAGAAGTTCAGAAGCTGAGAGCTGAGGCTAAAAGACTTGAAGAGCAGTGTGAGCTCAAGAACAACAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGAGTGTAGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCTAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAGTAACAGGAAAAGATAATGCTGGACAAGAAGGAAAGGTTGGGATACCTGAATTTCTTCCTAATTTGGCACCCATACATACAACAGATATGAATAGTCCAAGAGATGGAAACATGGACAGTCTATCCAATTCCCCTATAGTATTCTCTGACACTTTCAAATCCAAATTTGGGAAAAGTATGTTCCTAAAAAATGATAGATTGATGGAGAATTCTAACTTCACTAGAGCAGAACCTCAACAAGACACTGCAGATAGTTTGAAGGCGGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTTACAACCTTGCCATGTGGTAAAAAGGGCCTTAAGAGAGTGAGATTTAGCCGGAAGCGGTTCTCACAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGGCACAGTGTACAACAGGTATGAGATTGAAGGATATATGAACACTAGCCAAGGTCAGGTGAAAGGCTAA 3228 0.4052 MTMGGGEQSLAPLPFDRTLEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTKIIQGQGNIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRTFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDNSQFTQVHSVCASPTLSLSERCFSDGLSYTSDNIYSSASFLSSTHGITDSVPSSPYIDSDIHRKIESTRVDKEHKNLSYRSLMPPTSPHVGNNNVLKDVMIWGGGIGCLVGIVNERFVQNGIYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKVVDSLSGIHVKHVACGEYHTSALTDSGEVYTWGNDVCCSDLVDEGRIRSQWIPHKLSGPLDGISISSVACGEWHTALVSSCGRLFTYGDGTFGVLGHGDLRSSSRPKEVESLSGLMVRSVACGSWHTAAIVEVMFDRFRYNTPTGKLFTWGDGDEGRLGHADNGSKLVPTCVAQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDKAVMVEGQLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRHVPCFVEALRDRQVDTITCGPSFTAAICLHRPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKVINASLAPSKSKAFRVCDQCFERQQGSTHSAMSSKSRNYNTQQILKHQNKIGDLTEDRGETTVTQGPLLSLSQSCYRKSMPSGRKDWKNQQESQHDLEDGSYRLGGMPQCGKVPCPVLFKNNSTENSAVHVSSSKNKLASVSPLNVESTEYNFPNAETDTIKSEKMLIEEVQKLRAEAKRLEEQCELKNNKIQECQQKIEESWSVAREEAAKCKAAKEVIKALALRLHTVTGKDNAGQEGKVGIPEFLPNLAPIHTTDMNSPRDGNMDSLSNSPIVFSDTFKSKFGKSMFLKNDRLMENSNFTRAEPQQDTADSLKAEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSQKEAERWWEENQGTVYNRYEIEGYMNTSQGQVKG. 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02395 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Seca6g02395 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Seca6g02395 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Seca6g02395 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Seca6g02395 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 493 541 IPR000408 -
Seca6g02395 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Seca6g02395 1075 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Seca6g02395 1075 Pfam Pleckstrin homology domain 20 126 IPR001849 -
Seca6g02395 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Seca6g02395 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 725 IPR013083 -
Seca6g02395 1075 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Seca6g02395 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Seca6g02395 1075 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Seca6g02395 1075 Gene3D - 489 653 IPR009091 -
Seca6g02395 1075 SMART fyve_4 646 715 IPR000306 GO:0046872
Seca6g02395 1075 Gene3D - 18 135 IPR011993 -
Seca6g02395 1075 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Seca6g02395 1075 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
Seca6g02395 1075 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Seca6g02395 1075 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Seca6g02395 1075 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Seca6g02395 1075 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Seca6g02395 1075 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Seca6g02395 1075 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Seca6g02395 1075 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Seca6g02395 1075 CDD FYVE_like_SF 657 710 - -
Seca6g02395 1075 CDD PH_PLC_plant-like 17 129 - -
Seca6g02395 1075 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1060 IPR013591 -
Seca6g02395 1075 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Seca6g02395 1075 SUPERFAMILY PH domain-like 18 128 - -
Seca6g02395 1075 SUPERFAMILY FYVE/PHD zinc finger 651 729 IPR011011 -
Seca6g02395 1075 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 915 - -
Seca6g02395 1075 Coils Coil 853 887 - -
Seca6g02395 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Seca6g02395 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Seca6g02395 1075 Gene3D - 257 387 IPR009091 -
Seca6g02395 1075 Gene3D - 388 482 IPR009091 -
Seca6g02395 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02395 Seca-Chr6 86346916 86355323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02395 1002 1065 Major Intrinsic Protein MIP AT1G31880 45.312 7.32e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02395 - - gmx:100797223 1854.34