Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02394 ATGGCACCTGTTTCATTGCCTCCTGGGTTTAGGTTCCATCCTACAGATGAAGAACTTGTTTCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAGATTGAGTTGGAGATTATCCCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTGTTACCTGGAAAAGATTTGGAGTGGTATTTCTTCAGCCCAAGAGACAGAAAGTACCCAAATGGATCAAGAACAAACCGTGCAACGAAATCAGGGTATTGGAAAGCCACAGGGAAAGATCGTAAGGTGCACTCTCAGAGTCGTGCAGTTGGAATGAAGAAAACCCTAGTTTACTATCGAGGTAGGGCACCACATGGCTCTCGCACTGGTTGGGTTATGCATGAATACCGTCTTGATGAGAGAGAATGTGAAACTAATTCAGGCTTGCAGGATGCATATGCTCTTTGTCGTGTGATCAAGAAGAGTGCAGTGATTGCCCCAAAAGTTGGGGAACAATATGTTAATAATAATGTCAGCACCAGGCATGCAAATCAGATAACAAGTGATCAATCATCAGCTAGCATTGAGCTGTACACTGATGGAAGAGGTGAAGTTTTAGAGAGCTCAAATTATTTGATGCCTTGGGATACATGCTCAACCCAATTAAACATGAATGGGACTAATAATAATAATGTCAATATCAATGGTGGGACAAGGGATAATGGGATGTGGTCACATTTCTTATCAGAAGACTTACTCAATCTTCCAACATCTTCTTCATCATTTCCCAATTATGGAGCCATACCTTACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCTAGGATGCAACATAGGTTTTCCATGCCTCCTTTGGAAGTGGAAGACTTCCCTCAAGTTGGCATTTCTGAGCTGAGGATGACACAAGCCTCAGGTTCCATGTGTGGAGGCAGAAATGAAACAGATATCTTGCAGGAAATTCTCTCAGTTGCTCAAGCTTCCCAGGACTTGATAAATCAATCCAACTATTCACATGCATTGGGTGGCAATGAAAACTATGCTCCTCATGAAAATGATTTTACTTTTATGGTTGATACTAATTACAATCATGTGAATGATATGAACTCCATGAGATATGTTGACAAGGCATGGGAAGATATGAACACAAGATCAATAGAGATCAGGGATTTTGATGATGAGTTCAAGGCAGAGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGCAAAGATTTAGAAAAGATTTTTATGGAAGAGCAAAAGGTTGTTCCTATTAAGGATGTTTCAAGCTTCCAAACAAACAGGGAAAACAATGAGGTGCAAGCTGAATCTGAGCAACATAATAGCAACAAAGGACTGAATGATACTGACATTGAAGATTTCTCATTGGGGTTCATCAATGATGATGACCCCAATGAGAACTTTATAGATGATAGTAACATTGATTATTCAAATTCTACAAGCTTTGAGCTTGTTGAGGAAACAAAAGTCAGTCATGGAATGTTTGTTTCAACTCGTCAAAAGGCTGATACTTTCTTTCATCAAATAGCTCCTTCACAAACCCTCAAAGTTCAGCTCAACCCAGTAATGGCAAATAAACAATGTTCTATACAGAATGCAGAGACATTGAACCAAGGGCACTCTTTCTTTAGGAAGTTTAAGGCTTATGTGATGGGGAAACTGAAAAAGCCATCAAAGACAATAGCAAGTGCCCTTGTATTCATCTTTGCACTTTTGTTGATGCATTTTGTTTATCTGAAGGAGCAAGTAGAAGAATGGAAACCAAGCCCAGAGGATGTGAAAAATAAATGTTGCTCTAATGCTAACAACATGAAGAGAATGATACAACCTGCTGAGAAAATCATATGGAATGAGGAAGAAAAAATTGGGTTTGTTAGTATTAAAAGTGGGGAAGGATTTAGTGTGTGGTCTTGA 1947 0.3955 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVHSQSRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECETNSGLQDAYALCRVIKKSAVIAPKVGEQYVNNNVSTRHANQITSDQSSASIELYTDGRGEVLESSNYLMPWDTCSTQLNMNGTNNNNVNINGGTRDNGMWSHFLSEDLLNLPTSSSSFPNYGAIPYPPSKVDIALECARMQHRFSMPPLEVEDFPQVGISELRMTQASGSMCGGRNETDILQEILSVAQASQDLINQSNYSHALGGNENYAPHENDFTFMVDTNYNHVNDMNSMRYVDKAWEDMNTRSIEIRDFDDEFKAERMVENLRWVGMSSKDLEKIFMEEQKVVPIKDVSSFQTNRENNEVQAESEQHNSNKGLNDTDIEDFSLGFINDDDPNENFIDDSNIDYSNSTSFELVEETKVSHGMFVSTRQKADTFFHQIAPSQTLKVQLNPVMANKQCSIQNAETLNQGHSFFRKFKAYVMGKLKKPSKTIASALVFIFALLLMHFVYLKEQVEEWKPSPEDVKNKCCSNANNMKRMIQPAEKIIWNEEEKIGFVSIKSGEGFSVWS. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02394 648 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 240 - -
Seca6g02394 648 MobiDBLite consensus disorder prediction 438 455 - -
Seca6g02394 648 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Seca6g02394 648 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Seca6g02394 648 MobiDBLite consensus disorder prediction 438 457 - -
Seca6g02394 648 FunFam Nac domain-containing protein 86 15 159 - -
Seca6g02394 648 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Seca6g02394 648 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02394 Seca-Chr6 86324508 86328323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02394 1 589 NAC Transcription Factor Family AT1G65910 47.659 1.49e-169 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g02394 NAM 6.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02394 - - gmx:100818019 1003.43