LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g02388	ATGCCACCACTTTCCATCTTCATCTCCATCTTCCTCAACGCTGCTACCACCTTCTTCTTCTTCTTCTTCGCCGCCGCCACAACACAATTCGACTTTGACACCTTAACCTTAAGCACCCTCAAGCTCCTCGGCGATGCCCACCTCAACAACAACACCGTCAGCCTCACCGGCGACCCTGCCGTCCCCAATTCCGCCGCCGGAAGAGCCCTTTACTCCACTCCCATCAGATTCCGGCAATCGGGTAACCCCCTTTTGGCCAGCTTCACCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCTTCCTCCGTCGGCGGCGGACTCGCCTTCCTCATCTCGCCGGACGCCGACGCCATCGGAAACCCCGGCGGCTTCCTAGGCCTCGGTGGCTCCTCTTCCTCCACTTCCTTCCTCGCCGTCGAATTCGACACCCTCATGGACGTGGAATTCAACGACATTAACGGAAACCACGTCGGCGTCGACCTCAACACCGTCGTTTCAAGCCAAGTTGGTGACTTGGGAACCATCGGAATCGATCTCAAGAGCGGTGACTCAGTGAACGCGTGGATCGAATACGATGGAACCACCAAAGGGCTTAACATTTGGGTTTCCTACTCGAATGTGAAACCCAAAGATCCAATTTTGAAGGTGGATCTTGATGTGGGTCAGTACGTGAATGAGTTCATGTACGTGGGTTTCTCTGGGTCTACACAGGGTAGCACAGAGGTTCACAATGTGGAGTGGTGGAGTTTCACCTCCAATTTTGATTCCACAACGGCACCTTCATTGGCTCCTTCTGCTCAACAAAAAGAGAGTAAGTCTTCTTGTCACAGTGGTTTGTGTAAGCAAGGTATGGGAGCAGTTGCTGGGGTTGTCACTGCTAGTGCTTTTGTTCTTGCTCTGTTTGCTGGTGCATTGATTTGGGTGTATTCCAAGAAGGTGAAGCGTGTTAAGAGGTTTGAATCGCTTGAGTCAGAGATCATCAGAATGCCTAAGGAATTTACCTATAAGGACCTCAAATTGGCCACAAGGTTCTTCAGTGCTAATAGGGTCATTGGTCATGGTGCTTTTGGGACTGTCTATAAGGGGGTATTGCCTGAGAGTGGTGACATTGTTGCTGTGAAAAGGTGTAACCATAATGGCCAAGGTAAGAATGAGTTTTTGTCTGAGTTGTCTATAATTGGGAGCCTTAGGCATAGAAATCTTGTTCGCCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTATTGGTGTATGACTTGATGCCAAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGAATACCTTTACCATGGCCTCATAGGCTCAAAATTTTGTTAGGTGTGTCATCTGTTTTGGCCTATTTGCATCATGAGTGTGAAAATCAGGTGATTCATAGAGACATCAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCCAGGTTAGGTGATTTTGGTTTAGCTAAGCAAACGGAACATGACAAGTCCCCTGATGCCACAGTGGCTGCTGGAACAATGGGGTACCTGGCTCCTGAGTATGTGCTTACAGGTAGAGCCACTGAGAAAACTGATGTGTTCAGTTATGGTGCTGTGGTTCTTGAAGTGGCTAGTGGGAGAAGACCTATAGAGAAAGATGCTACTGGGGCTGGTAAAGGTGGGGTTAGAAGCAATTTGGTAGAATGGGTTTGGAATTTGCACCAGGAAGGGAAGTTGTTAATGGCAGCTGATCCAAGGCTTGAGGGTGAGTTTGATGAAGGGGAAATGAGGAGGGTGCTATTGGTTGGCTTAGCTTGTTCACACCCTGATTCAATGGCAAGACCAACTATGAGGGGTGTGGTTCAGATGCTGCTAGGTGAGGCTGAAGTGCCAATTGTCCCTAGAACCAAGCCATCTACTAGTTATACTACTTCCCAACTCTTGATGACATTGCAAGATAGTGAATCTGACTCCAATGCTATAATCACCATCTCTACCTCCTCATCAGAGAACAGCTTCAATGATAGGGATATAGTCTGA	2025	0.481	MPPLSIFISIFLNAATTFFFFFFAAATTQFDFDTLTLSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYSTPIRFRQSGNPLLASFTTFFSFSVTNLNPSSVGGGLAFLISPDADAIGNPGGFLGLGGSSSSTSFLAVEFDTLMDVEFNDINGNHVGVDLNTVVSSQVGDLGTIGIDLKSGDSVNAWIEYDGTTKGLNIWVSYSNVKPKDPILKVDLDVGQYVNEFMYVGFSGSTQGSTEVHNVEWWSFTSNFDSTTAPSLAPSAQQKESKSSCHSGLCKQGMGAVAGVVTASAFVLALFAGALIWVYSKKVKRVKRFESLESEIIRMPKEFTYKDLKLATRFFSANRVIGHGAFGTVYKGVLPESGDIVAVKRCNHNGQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALYEARIPLPWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLAKQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDATGAGKGGVRSNLVEWVWNLHQEGKLLMAADPRLEGEFDEGEMRRVLLVGLACSHPDSMARPTMRGVVQMLLGEAEVPIVPRTKPSTSYTTSQLLMTLQDSESDSNAIITISTSSSENSFNDRDIV.	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g02388	674	CDD	lectin_legume_LecRK_Arcelin_ConA	44	255	IPR001220	GO:0030246
	Seca6g02388	674	PANTHER	-	50	629	-	-
	Seca6g02388	674	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	255	IPR013320	-
	Seca6g02388	674	FunFam	L-type lectin-domain containing receptor kinase VIII.1	310	421	-	-
	Seca6g02388	674	SMART	serkin_6	346	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g02388	674	SUPERFAMILY	Protein kinase-like (PK-like)	328	657	IPR011009	-
	Seca6g02388	674	ProSitePatterns	Legume lectins beta-chain signature.	138	144	IPR019825	-
	Seca6g02388	674	Gene3D	-	26	267	-	-
	Seca6g02388	674	Gene3D	Transferase(Phosphotransferase) domain 1	422	626	-	-
	Seca6g02388	674	CDD	STKc_IRAK	352	619	-	-
	Seca6g02388	674	FunFam	L-type lectin-domain containing receptor kinase VIII.1	26	264	-	-
	Seca6g02388	674	ProSitePatterns	Protein kinases ATP-binding region signature.	352	375	IPR017441	GO:0005524
	Seca6g02388	674	Pfam	Protein kinase domain	348	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g02388	674	FunFam	L-type lectin-domain containing receptor kinase VIII.1	422	637	-	-
	Seca6g02388	674	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	465	477	IPR008271	GO:0004672\|GO:0006468
	Seca6g02388	674	ProSiteProfiles	Protein kinase domain profile.	346	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g02388	674	Pfam	Legume lectin domain	28	258	IPR001220	GO:0030246
	Seca6g02388	674	Gene3D	Phosphorylase Kinase; domain 1	308	421	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g02388	Seca-Chr6	86204241	86206286	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g02388	4	656	Receptor kinase-like Gene Family	AT3G53380	65.412	0.0	885

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca6g02388		Pkinase	9.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g02388	-		-	gmx:100815895	1037.71