Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02377 ATGCCCTTGGAAGGGATTTTCATTGAACCCACTTCAACTACAACTCCTCATCCTGATCTTTCTCTTCACATAAGCCCACCAACCACTTCCTCTTCTTTGATTTGTAACAACAACACAACCCAAGTAGCATCTTCTGGTGGCACCACCAATTATGAACCTCACAATCCAACTAATTTTATTTTCCCTTCAAGGACAGTGTCTCAAGCTCACACTGAGCTCTCTCTTGGAAGGAATTTCAGTGGTGGTGAAGAACCACCACCACCACCACAACTACCACCACATAACCACCCTTATTATCAACCACAGTTCCATCCTCTCCACCACCACTCTAATAACACTACAACAACAACAACTAGCACCTCCACCATGAATCACATAAATTATGGGGTTTCATTGCTTGATGTGTCATCAACAACACCAGAAGGATTGAGGCCAATCAAGGGGATTCCTGTCTATCACAACCGTTCCTTCCCTTTCTTACCTATGGAACATTCTAGAGACAAAGATCATCATCCTCCTCATCCAAAGATGTGCTTATATCATCACATCCCTTCTTCTTCCTCTCTCTCTTCCACTACTACTACCCCTTCTTCTTCCACTTCCCCTTATGGGGGTTTGGATCCCATCTCCTTTTTGAACTCCGGCGGCTCCGCAGGATATAGAGCCGCCGCCGCCACAAGGTTCAATGGGATTTCCGGTGAGCCTTTCAAATCTCATCACCATCCATTGCACCATCATCATCACTCACACTATGGACCTTCCTCACATGAAGCATCTTCTGGGTTGATGAGATCAAGGTTTTTGCCTAAACTCCCAACAAAGAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGCACCCTCCATGCTCGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCTGGAGAAGATGACATGTCTCCAATAGGGAGCAGTGGTGGTATGCGTCAATTTCAAGATCAAAGAGGTCTGCCAGATAGGCCAGTGCAACAAGATATGGACTATTCTTCAAATGCCACTCTATGGAGCAATTCTTCAAGTAGAGAGCCATGGCCACAAACTAGTTCCAGCGACGTCGAAGGTTTTAGATCAACTATCTTCCAGTCACAACCAATATCAGGAGGGCATCAAATTCAGGAGTGTGATTCAACTCAACTCAAGAACAGTTTGTCGGGATCTAATTTAGAGTGTAAGAATCCAAGCTTGGAGTTCACATTAGGCAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1401 0.4511 MPLEGIFIEPTSTTTPHPDLSLHISPPTTSSSLICNNNTTQVASSGGTTNYEPHNPTNFIFPSRTVSQAHTELSLGRNFSGGEEPPPPPQLPPHNHPYYQPQFHPLHHHSNNTTTTTTSTSTMNHINYGVSLLDVSSTTPEGLRPIKGIPVYHNRSFPFLPMEHSRDKDHHPPHPKMCLYHHIPSSSSLSSTTTTPSSSTSPYGGLDPISFLNSGGSAGYRAAAATRFNGISGEPFKSHHHPLHHHHHSHYGPSSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPIGSSGGMRQFQDQRGLPDRPVQQDMDYSSNATLWSNSSSREPWPQTSSSDVEGFRSTIFQSQPISGGHQIQECDSTQLKNSLSGSNLECKNPSLEFTLGRPDWNGKGQA. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02377 466 MobiDBLite consensus disorder prediction 231 260 - -
Seca6g02377 466 MobiDBLite consensus disorder prediction 82 99 - -
Seca6g02377 466 MobiDBLite consensus disorder prediction 380 409 - -
Seca6g02377 466 MobiDBLite consensus disorder prediction 76 119 - -
Seca6g02377 466 MobiDBLite consensus disorder prediction 105 119 - -
Seca6g02377 466 MobiDBLite consensus disorder prediction 183 203 - -
Seca6g02377 466 NCBIfam myb-like DNA-binding domain, SHAQKYF class 280 333 IPR006447 GO:0003677
Seca6g02377 466 MobiDBLite consensus disorder prediction 1 21 - -
Seca6g02377 466 FunFam Myb family transcription factor 278 336 - -
Seca6g02377 466 MobiDBLite consensus disorder prediction 335 409 - -
Seca6g02377 466 SUPERFAMILY Homeodomain-like 277 333 IPR009057 -
Seca6g02377 466 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 463 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca6g02377 466 Gene3D - 279 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02377 Seca-Chr6 85910698 85916160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02377 1 463 G2-like Transcription Factor Family AT5G16560 39.638 4.60e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g02377 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02377 - - ccaj:109796302 627.476