Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02369 ATGCTCGCTCTCCGTACCTCCCTCAACCCGCCCGAATCCCTCGGTTGGTCCGACCCGGATCCATGCAATTGGAAGAACGTCGGCTGCTCCGACGACAAACGGGTCACCCGGATCCAAATCGGTCGCCAGGGCCTCCATGGTACCCTCCCCAACAGCACCACTCTCCAAAGCTTAACCCAGTTAGAGCGCTTGGAGCTCCAATACAACAACATTTCGGGTCCTCTTCCTAGCTTAAACGGGTTGAGTTCCCTCCAAGTTGTTATCCTTAGCAACAACGGTTTCACTTCCATCCCAAGCGATTTCTTCTCTGGTTTGTCACAGCTTCAATCCGTGGAGATCGATCACAACCCTTTCCAAGGTTGGGAAATCCCCGACAGCCTCCAAAACGCTTCTTCTCTTCAGAACTTTTCAGCTAATTCCGCCAACATCATAGGAAAAATCCCAGATTTTTGGGGCCTTCTTCCTGGTTTGACCCACTTGCATTTGGCCTTCAATAGCCTTGAGGGTGTGTTGCCTTTGAGCTTTGCTTCATTGCAGGTTCAGACTCTCTGGCTGAACGGGCAAAAAGGTGATGGTGCTAACAGGCTTGGTGGTACTGTTGAGGTTTTGCAGAACATGACTTCGTTGACACAGGTTTGGTTGCATTCTAATACGTTTACTGGGCCCTTGCCAGATTTCTCGGGCTTGCAAAGCTTGGAAGATTTGAGCTTGAGGGATAACTCTTTTACTGGTCCTGTTCCTGGTTCCTTGATGGGACTCAAGTCCCTCAAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGGCCAGTGCCTGTGTTTGGTAAAGGAGTTGAGGTGGATATGGATATAAGAGATGATACCAATAGCTTTTGCTTGCCAGGTCCTGGTGACTGTGATCCAAGGGTGAAGATTCTGCTTTCTGCTGTTCAGTCTTTGGGGTATCCCAAAAAGTTTGCTGAGGATTGGAAGGGGAATGATCCATGTACTGAGTGGATTGGGGTTACTTGTAGTGATGGGAACATTACTGTTGTTAATTTTCAGAAGATGGGTCTTACAGGTACCATATCCCCTGAGTTTGCTTCACTTAAATCACTGCAAAGACTGGTACTTGCTGATAATAACCTCACTGGTTCAATTCCTGAGGAGCTTACTTCTCTGTCTGGGCTTACTGAATTGGATGTTGCAAACAATCAGCTTTATGGAAAAATACCAAGTTTTAAGAGCAATGTAGTTGTGACTACAAGTGGTAATAAGGATATAGGGCAGGATAAACCCAGCCCATCATCCCCAATAGGTCCATTGTCACCAAACTCAACAGCTCCAAACACAAAGGAAGAAAATGGTAGCAAAAAATCTAACCATGTAGGAGTAATTGTGTTTGCTGTGATTGGGGGTGTAGTGTTGGTTTTGGTGTTTGGTTTCTTAGTTTTCTGCTTGTTTAGGATGAAGCAAAAACGGCTAAGCAGGGTGCAGAGCCCAAATGCACTGGTTATTCACCCCCGGCATTCTGGATCAGATAATGAGGGCGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGGGTTGGTTCTGTTAGTGAAACCCAAACCATGCCTAGCAGTGAAGCAGGGGATATTCAGATGGTTGAAGCAGGAAACATGGTCATTTCTATACAAGTCTTGAGGAATGTCACTGACAATTTCAGTGAGAAAAACATATTGGGACAAGGAGGTTTTGGAACAGTTTATAAAGGTGAATTGCATGATGGTACAAAAATTGCAGTGAAAAGAATGGAGTCTGGGGCAATATCTGGGAAAGGTGCAACAGAATTTAAGTCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGGCATCTTGTTTCCCTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGAACATTGAGTAAGCATCTTTTTGACTGGATAGAAGAAGGACTGAAACCACTAGAGTGGAATAGGAGATTGACCATTGCCTTAGATGTAGCAAGGGCTGTTGAGTACCTTCATAGCTTGGCCCATCAAAGCTTTATACATAGGGACTTAAAGCCTTCAAACATTCTACTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTGCGTCTTGCTCCAGAAGGAAAAGCTTCAATAGAAACAAGAATTGCAGGAACTTTTGGATACTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACAACTAAAGTAGATGTGTACAGCTTTGGGGTAATATTGATGGAACTAATAACTGGAAGAAGAGCACTAGATGAAACCCAACCAGAAGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTATGTAAATAAGGACACATTCCGCAAGGCCATTGACCCCACAATCGAGCTCAATGAGGAAACACTTGCTAGTATTCACACAGTAGCTGAGTTAGCTGGCCATTGCAGTGCAAGGGAGCCATATCAAAGGCCTGATGCAGGTCATGCTGTGAATGTGCTTTCTTCTCTTGTAGAACTATGGAAACCTTCTGATAACAATTCTGAAGACATATATGGCATTGATCTAGACTTGTCTTTACCACAAGCACTAAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAAATCCTTCCTAGCTTGGATAACACACAAACTAGCATACCTACTCGGCCTTATGGATTTGCTGAGTCTTTCACATCAGCAGATGGTAGATGA 2721 0.4465 MLALRTSLNPPESLGWSDPDPCNWKNVGCSDDKRVTRIQIGRQGLHGTLPNSTTLQSLTQLERLELQYNNISGPLPSLNGLSSLQVVILSNNGFTSIPSDFFSGLSQLQSVEIDHNPFQGWEIPDSLQNASSLQNFSANSANIIGKIPDFWGLLPGLTHLHLAFNSLEGVLPLSFASLQVQTLWLNGQKGDGANRLGGTVEVLQNMTSLTQVWLHSNTFTGPLPDFSGLQSLEDLSLRDNSFTGPVPGSLMGLKSLKVVNLTNNLFQGPVPVFGKGVEVDMDIRDDTNSFCLPGPGDCDPRVKILLSAVQSLGYPKKFAEDWKGNDPCTEWIGVTCSDGNITVVNFQKMGLTGTISPEFASLKSLQRLVLADNNLTGSIPEELTSLSGLTELDVANNQLYGKIPSFKSNVVVTTSGNKDIGQDKPSPSSPIGPLSPNSTAPNTKEENGSKKSNHVGVIVFAVIGGVVLVLVFGFLVFCLFRMKQKRLSRVQSPNALVIHPRHSGSDNEGVKITVAGSSVRVGSVSETQTMPSSEAGDIQMVEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAISGKGATEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFDWIEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRRALDETQPEDSMHLVTWFRRMYVNKDTFRKAIDPTIELNEETLASIHTVAELAGHCSAREPYQRPDAGHAVNVLSSLVELWKPSDNNSEDIYGIDLDLSLPQALKKWQAYEGRSQILPSLDNTQTSIPTRPYGFAESFTSADGR. 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02369 906 FunFam receptor protein kinase TMK1 522 637 - -
Seca6g02369 906 CDD STKc_IRAK 566 839 - -
Seca6g02369 906 FunFam receptor protein kinase TMK1 638 855 - -
Seca6g02369 906 SMART LRR_typ_2 229 252 IPR003591 -
Seca6g02369 906 SMART LRR_typ_2 362 386 IPR003591 -
Seca6g02369 906 SMART LRR_typ_2 154 177 IPR003591 -
Seca6g02369 906 SMART LRR_typ_2 81 104 IPR003591 -
Seca6g02369 906 SMART LRR_typ_2 58 80 IPR003591 -
Seca6g02369 906 MobiDBLite consensus disorder prediction 882 906 - -
Seca6g02369 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 685 697 IPR008271 GO:0004672|GO:0006468
Seca6g02369 906 FunFam Leucine-rich repeat receptor-like kinase 300 423 - -
Seca6g02369 906 SMART serkin_6 560 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02369 906 Gene3D Ribonuclease Inhibitor 1 298 IPR032675 -
Seca6g02369 906 Gene3D Phosphorylase Kinase; domain 1 520 637 - -
Seca6g02369 906 ProSitePatterns Protein kinases ATP-binding region signature. 566 588 IPR017441 GO:0005524
Seca6g02369 906 MobiDBLite consensus disorder prediction 416 450 - -
Seca6g02369 906 SUPERFAMILY Protein kinase-like (PK-like) 537 844 IPR011009 -
Seca6g02369 906 Pfam Leucine rich repeat N-terminal domain 2 30 IPR013210 -
Seca6g02369 906 Pfam Leucine rich repeat N-terminal domain 303 337 IPR013210 -
Seca6g02369 906 ProSiteProfiles Protein kinase domain profile. 560 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02369 906 Pfam Protein kinase domain 561 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02369 906 Gene3D Transferase(Phosphotransferase) domain 1 638 856 - -
Seca6g02369 906 Gene3D Ribonuclease Inhibitor 300 424 IPR032675 -
Seca6g02369 906 SUPERFAMILY L domain-like 17 408 - -
Seca6g02369 906 FunFam Receptor-like kinase TMK4 1 296 - -
Seca6g02369 906 PANTHER OSJNBA0070M12.3 PROTEIN 1 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02369 Seca-Chr6 85788178 85791658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02369 38 827 Receptor kinase-like Gene Family AT1G55610 31.340 2.12e-88 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca6g02369 Pkinase 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02369 K00924 - gmx:100813768 1454.11