Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02342 ATGGGAAGGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGACTGCTGAGGAGGACAAGAAGCTCATCAATTTCATCCTCACTAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAACTAGCAGGGCTGTTAAGGTGCGGGAAAAGTTGTAGGCTTAGATGGACAAACTACCTGAGACCAGACCTAAAGAGAGGTCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTACCTGGAAGAACTGATAATGAGATTAAGAACCACTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACACACAAGTCACTATCTAATTCTTCTGAGCAAACCCAAACACAACCTGAACAACACCAACAAGAACATCAGCAATCATCACCAGTTGACTTGCAACCCAAATTTGAACCTGAAAATGACCAAAATAAGGAGCCAGAGAAGTCAGAGACTTCATTTGAGTCATCAACTATCACTGAAGCCAAAGAGGAAGACCAAATTATGACACCCCTATTTGACTCAATGGAACTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATAAAACCTGATGAGATTCTAGTTCCTTATGCACCTTCTACTTCATCAACCAGTACATCATCATCATCTTATGCTTCAAATTCAAATTCATCAAACTTCCTTGAAGACTTGATGCTCCCTGATTTTGAGTGGTCTCATAATTACAATGACAATAACAATATTGAAAATATGAACGACAACAACAATAGCAGTATGGCCTTGTGGGATGATGACTTTTTGAGAAGTTGGGATTTTCTTATTAATGATGATGATGGTGACAGAAAGCAAGTGTTTGATGCTCCTCTTATTAATCAATACCCAAGAATGATCATGGATTCAGAATCTTGGGCCTATGGATTGTTTTGA 978 0.3937 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSNSSEQTQTQPEQHQQEHQQSSPVDLQPKFEPENDQNKEPEKSETSFESSTITEAKEEDQIMTPLFDSMELMNGFCTDEVPIIKPDEILVPYAPSTSSTSTSSSSYASNSNSSNFLEDLMLPDFEWSHNYNDNNNIENMNDNNNSSMALWDDDFLRSWDFLINDDDGDRKQVFDAPLINQYPRMIMDSESWAYGLF. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02342 325 Gene3D - 70 153 - -
Seca6g02342 325 SMART sant 66 114 IPR001005 -
Seca6g02342 325 SMART sant 13 63 IPR001005 -
Seca6g02342 325 FunFam MYB transcription factor 11 67 - -
Seca6g02342 325 CDD SANT 16 61 IPR001005 -
Seca6g02342 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca6g02342 325 MobiDBLite consensus disorder prediction 124 188 - -
Seca6g02342 325 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Seca6g02342 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca6g02342 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca6g02342 325 MobiDBLite consensus disorder prediction 160 188 - -
Seca6g02342 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca6g02342 325 MobiDBLite consensus disorder prediction 125 156 - -
Seca6g02342 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca6g02342 325 CDD SANT 74 112 IPR001005 -
Seca6g02342 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca6g02342 325 FunFam Myb transcription factor 71 133 - -
Seca6g02342 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 222 - -
Seca6g02342 325 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02342 Seca-Chr6 85459545 85461687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02342 1 325 MYB Transcription Factor Family AT5G16600 48.305 5.16e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g02342 Myb_DNA-binding 9.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02342 K09422 - gmx:100803624 488.804