Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02339 ATGGCTTCTTCCTTGGATATGTCACTGGACGATAGAATAAAGAACAGGAGTAACAACAGAGGGAGAGGTAGAGGACGTGGCAGAGCCCGTTCTGGCCGTGGGCCAAACGGGACTCTTAGTGGTGGAAGAATGACTGGTGCTGTTAATGGTAGAAGAATGGCTGGTCCTGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAAAGATTTGTTTGAAGATAGCCTAAGAGCTGCGGGGATTCAGGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTGGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAACAATGTACTTTTGGATGGGAAGCCCATGAAGATTGAGATTGTTGGTGCCAATTCAGAGTTGCCTATATCTGCTCGTGTGAATGTCACTGGGATGAATGGACAGAGGAAGAGAACAGTTGTAATGACGCCTAGAGGTGGTCGAGCTGGAGGTCCTGCCATGCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAGTGGGAGTGGGAGTGGACGTGGTCGAGGCCGTCGTGGCAGGGGTGGAGGCCGAGGTCGTGGAAGAAAGGATGCAACTGAGAAGTCAGCTGAGCAACTTGACAAGGAACTGGAGACCTATCATGCTGAGGCCATGCATATCTCATGA 876 0.4886 MASSLDMSLDDRIKNRSNNRGRGRGRGRARSGRGPNGTLSGGRMTGAVNGRRMAGPGNGGRTSGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQKDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANSELPISARVNVTGMNGQRKRTVVMTPRGGRAGGPAMPNRGAGWGRRGGTRSGSGSGRGRGRRGRGGGRGRGRKDATEKSAEQLDKELETYHAEAMHIS. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02339 291 Coils Coil 266 286 - -
Seca6g02339 291 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 289 - -
Seca6g02339 291 CDD RRM_THOC4 115 189 - -
Seca6g02339 291 SMART FoP_duplication_2 219 291 IPR025715 -
Seca6g02339 291 MobiDBLite consensus disorder prediction 262 291 - -
Seca6g02339 291 MobiDBLite consensus disorder prediction 1 71 - -
Seca6g02339 291 Pfam C-terminal duplication domain of Friend of PRMT1 225 285 IPR025715 -
Seca6g02339 291 SMART rrm1_1 116 188 IPR000504 GO:0003723
Seca6g02339 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Seca6g02339 291 SUPERFAMILY RNA-binding domain, RBD 21 189 IPR035979 GO:0003676
Seca6g02339 291 MobiDBLite consensus disorder prediction 217 291 - -
Seca6g02339 291 Gene3D - 107 272 IPR012677 -
Seca6g02339 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02339 Seca-Chr6 85368240 85373250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02339 114 189 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 1.95e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02339 K12881 - gmx:100801491 431.795