Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02338 ATGGTATCCCAAAGAAACAAGACTCCATGTTGTCCAATTAATTCTTTCCAAGCTAGCCTCCACCCTGATCAGAGCAACATAGTCTTTCTGAAAGATCCGGGTGGGAAAGTTTTTAACATAGGTGTTAGTTACACGAGCAAGGGTGCAGCTTTCTTAGAAAGGGTCAGTGACATGGTTGGATTCTATAGGTTGGTGGGGCCACATACTGTTGAATTTACATATAGGGGTGAAAGAAATTTTGACATTAAAGTGATGAATGGAAGTGGACTGGAGATTCAGTATGACAATGTCTTGAATGATGATGTGATAGTTATAGATTCTGACTCTGATGAAGAGGATCCTGAGGAGCCTACTTACTGGAAAGTAACTTTGACAAAGGCTGCCGCTGATGGCTCAAATCCATTGCATATACCTTCGAAGTTTGTGAGAGAAATTGGCTTGAAATATCAGAAAAGTGTTTCGGTCATAGAAAGTGGGACTAACTTTCACTGCAAAGTCATTCAACATAAGAGGAATAGAAAGAGTGCTCAGCGGTATCTAGTAAGAATGGCATCAAGGTTCACTCCACTGAAGGACATTGCTGCAAATAAGAAGATTGATTGGAAGATAAGGATTCAGATTATTAGGATATGGCAGATGACTGATTTTAAAAATCCTCTGCAAACTAATACTTTGGAGATGGTTTTGGTCAATGAACAGGAAGGAAGAATCCATGCTTATGTCAAACGGAGTCTTATTCCAACTTTTGAAGGTATTTTGAAGGAAGGTTTTGCCTATGTTTTGGAGAATCTTTTAGTAGGAGAAAACAAGATGAAGTTCAAAATCAAAACTACAAAGTTTAAGCTGGGTTTTATGCAAAGCACAAGAGTTGCTGAAATTACTATTGATACCATTCCTGTAAACCATTTTATCTTTGTCCCATTTTCTGAAATCAAATATGGTTCTGATGAGTTTATCTTGATGGATGCCATTGGGCACGTGGTAGGGCGTTATGATATCCAAGAATCTAAGAAAAAAGGCAAAATCAGAAAGCATTTGGAAGTTGTTCTTCAAGATTTGGAAAACAATCAATTGATCTGTACTTTGTGGGGTGAATTTGCGGACCAGATGGATCATTACCTTGCTAATGATACATCTAATAATGTTGTTATTGTTATACTACAATTTTGCAAGCGCAATTTCTTCAATGGAAAAATGGGTGTTTCTAATTCTTTTAATGGTACTAAGTTGCTGATTAACCCTAATATCAAGCAGGACTTGGAGTATAGAGAAAGATTTATGGTGCATGTTGATGTAATTGATGAGACTGGATCAACTACCTTTGTCATGTTTGATCATGTTGTTACTCAGTTCTTGGGGAAGTCTTCTGCTGATTTAGTTGAAGCAAAGAAGAATGAAAAATATGTTGTTGGCTATCCTCCTGATTTTGAAGCTTTTTTGAACAGAGATATGTTATTCAAAGTAGAGATTACCCAAGAAAATATTGATCAGAACTGGAAAGCTTATACTGTTAAGAAGTTAACTGATGATAAGGATGTGATTGAGCAGTTTAAGATATTGAACTCAATTAAGAATGTTGTCGAGGAATCGCAATTGGACTTTAAAGAAGATATTTCACAATTGCCCAGGGAAACTTCATTGGATGTTTTATGTGACAAATCAGAGGACACTCCTAGCTACAAGACAACTGGAAAAAGGGAAGCTTCTGCCATTAATTTGATCTCTGTTCTTGATGAGGAAGAAACTCATACATCCAGCACCAAGATGCCAAAACTATTGGCAGTGAAGAAGGAACCAGAGAATTGA 1806 0.3699 MVSQRNKTPCCPINSFQASLHPDQSNIVFLKDPGGKVFNIGVSYTSKGAAFLERVSDMVGFYRLVGPHTVEFTYRGERNFDIKVMNGSGLEIQYDNVLNDDVIVIDSDSDEEDPEEPTYWKVTLTKAAADGSNPLHIPSKFVREIGLKYQKSVSVIESGTNFHCKVIQHKRNRKSAQRYLVRMASRFTPLKDIAANKKIDWKIRIQIIRIWQMTDFKNPLQTNTLEMVLVNEQEGRIHAYVKRSLIPTFEGILKEGFAYVLENLLVGENKMKFKIKTTKFKLGFMQSTRVAEITIDTIPVNHFIFVPFSEIKYGSDEFILMDAIGHVVGRYDIQESKKKGKIRKHLEVVLQDLENNQLICTLWGEFADQMDHYLANDTSNNVVIVILQFCKRNFFNGKMGVSNSFNGTKLLINPNIKQDLEYRERFMVHVDVIDETGSTTFVMFDHVVTQFLGKSSADLVEAKKNEKYVVGYPPDFEAFLNRDMLFKVEITQENIDQNWKAYTVKKLTDDKDVIEQFKILNSIKNVVEESQLDFKEDISQLPRETSLDVLCDKSEDTPSYKTTGKREASAINLISVLDEEETHTSSTKMPKLLAVKKEPEN. 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02338 601 Gene3D - 185 292 IPR012340 -
Seca6g02338 601 Gene3D - 297 431 IPR012340 -
Seca6g02338 601 MobiDBLite consensus disorder prediction 579 601 - -
Seca6g02338 601 CDD RPA1_DBD_B_like 322 427 - -
Seca6g02338 601 SUPERFAMILY Nucleic acid-binding proteins 186 292 IPR012340 -
Seca6g02338 601 SUPERFAMILY Nucleic acid-binding proteins 421 524 IPR012340 -
Seca6g02338 601 PANTHER OS03G0429900 PROTEIN 197 423 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca6g02338 601 Pfam Domain of unknown function DUF223 226 311 IPR003871 -
Seca6g02338 601 SUPERFAMILY Nucleic acid-binding proteins 305 429 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02338 Seca-Chr6 85344047 85351800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02338 229 426 Core DNA Replication Machinery Family AT2G06510 25.000 1.92e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02338 - - egu:105048395 203.371