Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02327 ATGAAGAGGGATCACCAAGATAGTTGTGGTGGAGGAGGTGGTTCTAGCTACGGGAGTGGGAAGAGCAGCGTCGGTGGCGTGAAAGGTGAATGCTCGTCAATGCCGAACGGAAAGGCGAAGATGTGGGAGGATGAACACGACTCCGGTGCCACCGCCGGCGGAGGAATGGATGAGCTACTAGCGGCGTTGGGGTACAAGGTGCGTTCCTCCGACATGGCTGACGTGGCGCAGAAGCTTGAGCAGCTTGAGATGGTGATGGGAAGTGCTCAAGAAGATGGAATTTCACACCTTGCTTCTGATACGGTTCACTACGACCCAACGGATCTCTATTCATGGGTTCAAAACATGATCACCGAACTCAACCCTGCCCCACTCGATCCATCTTCCCTCTTGGAAAACCCCCAAATCAACGACTCTTTAGACCCTTCTTCCATCCTCAACAACAACAGTTCAAGGGTCTTCAACGATGACTCAGAATACGACCTCAGAGCAATCCCTGGCATAGCCGCATACCCACAACAACAGCAAAACCAAACCAATAACAACGAAGAAATCGAGCCCGGTAACAAGCGATTGAAGACATGGGGAATGGAATCACCCGATTCGGCGGCAGCGGCGGCCGCGCCGGCACCTGAACCAACTAGGCCGGTGGTTCTGGTTGACTCACAGGAAACAGGGGTTCGTCTTGTGCACACTATGATGGCTTGTGCTGAAGCGATTCAACAAGAGAATCTGAAGCTCGCGGATACGCTGGTGAAGCACATAGGGTTGCTCGCGGCGTCGCAAGCCGGAGCGATGAGGAAGGTTGCTTCTTACTTCGCACAAGCCTTAGCTCGGAAAATCTACGGAATCTACCCTGAGGAAACCATGGATTCATCTTTCTCCGATGTGCTTCACATGCACTTCTACGAATCCTGCCCTTACCTGAAATTCGCGCACTTCACCGCCAACCAGGCTATTCTAGAAGCTTTTGCCTCCGCCGGCAGGGTCCACGTCATCGATTTTGGCCTGAAACAGGGGATGCAGTGGCCGGCGCTAATGCAAGCCCTCGCATTGCGCCCCGGTGGCCCCCCAACTTTCCGGCTAACCGGAATCGGACCGCCGCAGAACGACAACACCGATGCACTCCAACAGGTTGGTTGGAAGCTCGCTCAGCTTGCTCAAACCATTGGTGTTCAGTTCGAATTTCGTGGATTCGTCTGTAACAGCCTCGCGGATCTTGACCCGAACATGCTCGAGATCCGACCCGGTGAAGCAGTTGCAGTTAACTCCGTCTTTGAACTCCACCGCATGCTAGCCCGACCCGGATCCGTTGACAAGGTTCTCAACACCGTGAAAAAGCTTAAACCCAAGATTGTTACTATCGTTGAGCAAGAAGCGAACCATAACGGACCGGTTTTCGTTGACCGGTTCACGGAGGCACTGCATTATTACTCGAGTTTGTTTGACTCACTGGAAGGTGCGTCCTCGAACGGGTCCGTTTCACCGAGTCAGGACCTGCTGATGTCTGAGTTGTACCTGGGGAGACAGATTTGCAACGTGGTGGCGTGTGAAGGTGTGGACCGGGTCGAGAGGCATGAGACGCTGAGTCAGTGGAGGGGGAGAATGGGTTCGGCCGGGTTCGACCCGGTTCATCTTGGGTCTAACGCGTTCAAGCAAGCGAGTATGTTGTTGGCTCTTTTCGCCGGCGGTGATGGGTATAGGGTGGAGGAGAATAATGGGTGTCTCATGCTTGGGTGGCACACGAGGCCACTCATCGCCACCTCGGCGTGGAAGCTCCCACCCGGTGAGTCGTAG 1797 0.5442 MKRDHQDSCGGGGGSSYGSGKSSVGGVKGECSSMPNGKAKMWEDEHDSGATAGGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEDGISHLASDTVHYDPTDLYSWVQNMITELNPAPLDPSSLLENPQINDSLDPSSILNNNSSRVFNDDSEYDLRAIPGIAAYPQQQQNQTNNNEEIEPGNKRLKTWGMESPDSAAAAAAPAPEPTRPVVLVDSQETGVRLVHTMMACAEAIQQENLKLADTLVKHIGLLAASQAGAMRKVASYFAQALARKIYGIYPEETMDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFASAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQNDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVDKVLNTVKKLKPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGASSNGSVSPSQDLLMSELYLGRQICNVVACEGVDRVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPPGES. 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02327 598 Pfam Transcriptional regulator DELLA protein N terminal 57 124 IPR021914 -
Seca6g02327 598 Pfam GRAS domain family 229 592 IPR005202 -
Seca6g02327 598 SMART DELLA_2 57 130 - -
Seca6g02327 598 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 177 588 IPR005202 -
Seca6g02327 598 FunFam DELLA protein GAI 55 120 - -
Seca6g02327 598 Coils Coil 72 92 - -
Seca6g02327 598 Gene3D - 55 120 IPR038088 -
Seca6g02327 598 MobiDBLite consensus disorder prediction 1 50 - -
Seca6g02327 598 MobiDBLite consensus disorder prediction 192 214 - -
Seca6g02327 598 ProSiteProfiles GRAS family profile. 220 592 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02327 Seca-Chr6 85163491 85165311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02327 1 593 GRAS Transcription Factor Family AT2G01570 60.616 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g02327 GRAS 9.4e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02327 K14494 - gmx:100799695 925.62