Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02324 ATGGATAACTTGTTGGGGCTGCTCAGAATTCATGTTGAAAGAGGGGTCAATCTTGCTATCAGGGATGTAGTGAGCAGCGACCCTTATGTTGTCATCAAAATGGGAAAGCAGACTCATTCCTGCATTTTATGTCTAATGCAGAAGCTGAAGACTCGGGTAGTGAAGAAGAATCTAAATCCTGAATGGAATGATGACTTGACTTTATCCATTTCAGATCCTCATGCTCCAATCCAGCTATTTGTGTATGACAAGGACACATTTAGCTTGGATGATAAAATGGGGGATGCTGAGTTTGTGATTGGTCCATTTGTTGAAGCAGTAAAGATGCGCTTGGAAGGTCTCCCTAATGGTACTATAGTTACAAGAGTGCAACCTAGCCGACAAAACTGCTTAGCAGAAGAGAGTAAAATTGTCTGGAAGGATGGCAAAGTGATCCAAAACATGGTTCTTAGGCTAAGAAATGTTGAGTGTGGGGAAGTGGAGCTCCAGTTGTGTTGGATTGACATTCCTGGTTCAAGGGGTATTTAG 528 0.4242 MDNLLGLLRIHVERGVNLAIRDVVSSDPYVVIKMGKQTHSCILCLMQKLKTRVVKKNLNPEWNDDLTLSISDPHAPIQLFVYDKDTFSLDDKMGDAEFVIGPFVEAVKMRLEGLPNGTIVTRVQPSRQNCLAEESKIVWKDGKVIQNMVLRLRNVECGEVELQLCWIDIPGSRGI. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02324 175 Pfam C2 domain 6 100 IPR000008 -
Seca6g02324 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 173 IPR044562 -
Seca6g02324 175 SMART C2_3c 7 112 IPR000008 -
Seca6g02324 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 101 IPR035892 -
Seca6g02324 175 CDD C2_ArfGAP 5 158 - -
Seca6g02324 175 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
Seca6g02324 175 Gene3D C2 domain 3 173 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02324 Seca-Chr6 85108351 85110740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02324 48 175 C2H2 Transcription Factor Family AT1G70790 60.000 1.10e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02324 - - gmx:100793531 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02324 6 85108351 85110740 Seca10g04756 10 109318237 109320816 ECH
Seca6g02324 6 85108351 85110740 Seca6g02324 6 85108351 85110740 ECH