Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02318 ATGGGTTTCTCCCAAGGAACTTGCACTGATTCCAGGGACCTTTCCAATGCCCAAAGCGCTCTTCCTCCATATGCTTCCACTTACAGTGACTACAACAAACTCAAATTTCGAACCTTTTTGAGGAAAATGATCTGGGAGTTTGGTTTTGCGTGTGTTGGCAACCCTTCCCGTAACCGGGGTAACTCCGAGAGAAACCTGGGTCATAGCGAAAACGACGGCAAAAAGATGAGTTTAGAACACAACAAGGCTTGGTTGCTTGCGGAGTCTGGTGGGTGTGGTGGAGCAGAATTGACCAATGCTGACCCTCAATCGGTTCACTCTTCTTTTAGGTTCAGCTTCTGTTCTCAGGTGGAGTTGGAGTCCTTGAACATGAGTTCTTCCTCTGCTGCTACCGTTTTGATGGTGAATTTGGACAATGGGGTGAGTGAATCTCGTGCTAAGGAACTCAAATGGAGGAGAATGGAGTCATTGGAGAAGAGCATTTCCCCTGTTGCTCACTCTTTGATCAGGTTCAGCTATGGTGAAATTCTATCTGCTACTCGGAATTTCTCCAAAGGTAGGGTGTTGGGAAGAGGGGCATTGAGCTGTGTTTTTAGGGGAAGAGTAGGGCTTTTTAGAAATGCTGTAGCAATTAAACAGTTGGACAAGGAAGACAAGGAGTCTGCCAAGGCCTTTTGTAGAGAATTGATGATTGCTAGCTCTCTTCATAGCCCAAACGTTGTTCCCCTTGTGGGTTTTTGTATTGACCCGGAGGAGGGTTTGTTTTTGGTTTACAAGTATGTCTCAGGGGGCAGCTTGGAGCGCCACTTGCATGGGAGGAAGAAGGGTGGGAAGGGTAGTTCACCACTTCCATGGTCTGTGAGGTACAAAGTTGCAGTTGGGATTGCAGAAGCTGTGGCTTATCTGCATAATGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAGCCCTCAAACATTCTGCTTTCTTCTAAGAAGACTCCAAAGCTATGTGATTTCGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCTCCTGAATATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGCCGGAAGCCAATTGAAGCGAGAAGGTCTCCCGGAGAGGAGAACTTGGTCTTATGGGTTCTATTATCAAACTTACTTGATCGAGGCAATAAAGTATGA 1257 0.4511 MGFSQGTCTDSRDLSNAQSALPPYASTYSDYNKLKFRTFLRKMIWEFGFACVGNPSRNRGNSERNLGHSENDGKKMSLEHNKAWLLAESGGCGGAELTNADPQSVHSSFRFSFCSQVELESLNMSSSSAATVLMVNLDNGVSESRAKELKWRRMESLEKSISPVAHSLIRFSYGEILSATRNFSKGRVLGRGALSCVFRGRVGLFRNAVAIKQLDKEDKESAKAFCRELMIASSLHSPNVVPLVGFCIDPEEGLFLVYKYVSGGSLERHLHGRKKGGKGSSPLPWSVRYKVAVGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRSPGEENLVLWVLLSNLLDRGNKV. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02318 418 ProSiteProfiles Protein kinase domain profile. 183 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02318 418 FunFam probable serine/threonine-protein kinase PBL7 144 260 - -
Seca6g02318 418 Pfam Protein kinase domain 184 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02318 418 Gene3D Phosphorylase Kinase; domain 1 167 260 - -
Seca6g02318 418 PANTHER OS01G0750732 PROTEIN 125 406 - -
Seca6g02318 418 SMART serkin_6 183 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02318 418 SUPERFAMILY Protein kinase-like (PK-like) 170 402 IPR011009 -
Seca6g02318 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Seca6g02318 418 Gene3D Transferase(Phosphotransferase) domain 1 261 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02318 Seca-Chr6 85018658 85020791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02318 171 416 Trihelix Transcription Factor Family AT1G70460 43.145 1.10e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca6g02318 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02318 - - gmx:100786826 666.381