Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02312 ATGGCACTGGCCAAAGACCAAATTCCACATGATTCAAGCATGGGAAACAAGGTTCAAACTTGTGTTTTCAACCACAAATCTGTGCTTGAACAGGAACATGGCTCTCAGAGTACTAATGGACTCAGCAATGATTCAGGTACAAGTATAACCCATTCTCCTCCTCTATGTGGTAGTGACAATGGTTATGTTTATAAGGGAAGAAACTATCAGCTTGAAGAAGCAGAACCTCTTATTAATTTCAAAGAAAGTAGTGGATACAGCAATATCAAGCAAGCTAGTGAATCTTTGCTTAGCTTTCAGCAGAGCAGGTTGGTTCCTAACAACTGTTACTTGAAAGATAGCAGTCAGAAAGAGTACCGTGTTTATGAGAATAATATGCATAAAGGCTATAACCAATGGAATCAGATTAGTCCTAGAAGCACCACAGACTTGCACCTGGTGCAGGATTTCAATTGTTTTCAAACTGCTAGTGGCTATAGCTCCATAGTCAATAGTGCAAAAGAGAAGCAACATGGCCAGAGTTCATATGGGTGGCTCTATTCAGAGCCAATTATGCATGTTGATAGTCTCCAGAACCAGAAGTCAATAATAGAAGAATCAGTCTTGAAAAAACGCCCTGCTATGGGAGAGAATATGAAAGCTGCCAAGAAGCAATGCTCAAGTGAGAGTAAAGCACCAAAACCAAGGTCAAGTACATCTAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAGGAATTGGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAATCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCCCAGAGAGACAGAAGTTCATGCTCAAAGTAG 981 0.4057 MALAKDQIPHDSSMGNKVQTCVFNHKSVLEQEHGSQSTNGLSNDSGTSITHSPPLCGSDNGYVYKGRNYQLEEAEPLINFKESSGYSNIKQASESLLSFQQSRLVPNNCYLKDSSQKEYRVYENNMHKGYNQWNQISPRSTTDLHLVQDFNCFQTASGYSSIVNSAKEKQHGQSSYGWLYSEPIMHVDSLQNQKSIIEESVLKKRPAMGENMKAAKKQCSSESKAPKPRSSTSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKSPDISQVKEAIDAILSSQRDRSSCSK. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02312 326 Gene3D - 227 289 IPR036638 GO:0046983
Seca6g02312 326 SMART finulus 238 287 IPR011598 GO:0046983
Seca6g02312 326 MobiDBLite consensus disorder prediction 224 238 - -
Seca6g02312 326 MobiDBLite consensus disorder prediction 32 54 - -
Seca6g02312 326 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 88 290 IPR045843 GO:0003700|GO:0006355
Seca6g02312 326 CDD bHLH_AtIND_like 233 295 - -
Seca6g02312 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Seca6g02312 326 Pfam Helix-loop-helix DNA-binding domain 242 282 IPR011598 GO:0046983
Seca6g02312 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 291 IPR036638 GO:0046983
Seca6g02312 326 FunFam Transcription factor bHLH83 230 289 - -
Seca6g02312 326 MobiDBLite consensus disorder prediction 209 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02312 Seca-Chr6 84684771 84686676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02312 61 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.588 1.29e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g02312 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02312 - - gmx:100810010 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02312 6 84684771 84686676 Seca6g02312 6 84684771 84686676 ECH
Seca8g01100 8 15909095 15911402 Seca6g02312 6 84684771 84686676 PCT