Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02310 ATGGAGAGTCCTCATTCTCCTTCTTCTTGTTCATCTTCGTCGTCTAGTTGTTCCTGGGAGGGTCACGGCGCCGACACCGTCAATTTGGAATCGGAGGAGCCGCGAACGCCGTTGGCCGTCCGGCGAGCTCTCCAACTCCTCAACTCCGGCGAGCCGGAGCTGCGGCTCCAAGCCGCTCGCGACATCCGGCGACTCACGAAGACCTCACACCGCTGTCGGCGCCAGCTCTCCGAAGCTGTGGGCCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCCGGAGCATTAGAGCCGATAATTAGTTTCCTCAAGTCACAAAATCAAAATCTGCAAGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGCGCCATTCCTCTTCTCGTGGAGATCCTTAGAGATGGAAGCCCGCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAACTTATCAACACACCCTAATAATCTCAGTATCATTCTCGAAACAAATCCAATCCCTTTTATAGTTGATCTTCTTAAAGCCTGTAAAAAATCCTCAAAAACAGCTGAAAAATGCTCTGCTTTGATAGAATCCTTGGTGGATTATGATGAGGGCAGAACTGCCTTGACATCTGAAGAAGGTGGAATTCTAGCAGTTGTGGAAGTTCTTGAAAATGGCACACTCCAAAGTAGGGAACATGCTGTTGGAGCACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTCATTCCAGGACTTCTCGAACTTACTGTTCAAGGAACAACCAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGAGAGAGTCTCCTTATCCAAGATCTGAAATTCAACCTGACACTCTTGAGAACATAGTATGCAACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAGAGTTTGAGACATTTACAGCAAAGGGCTCTCGTATGCACCCCAAGTGATCTGCCTATAGCTGGCTGTGCTTCTGAAGTTCCTTCAAAATGA 1185 0.4768 MESPHSPSSCSSSSSSCSWEGHGADTVNLESEEPRTPLAVRRALQLLNSGEPELRLQAARDIRRLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNQNLQESATASLLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTHPNNLSIILETNPIPFIVDLLKACKKSSKTAEKCSALIESLVDYDEGRTALTSEEGGILAVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTTKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVPSK. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02310 394 PANTHER U BOX DOMAIN-CONTAINING 31 322 - -
Seca6g02310 394 Gene3D - 24 377 IPR011989 -
Seca6g02310 394 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g02310 394 Pfam Armadillo/beta-catenin-like repeat 153 189 IPR000225 GO:0005515
Seca6g02310 394 Pfam Armadillo/beta-catenin-like repeat 110 147 IPR000225 GO:0005515
Seca6g02310 394 MobiDBLite consensus disorder prediction 1 34 - -
Seca6g02310 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Seca6g02310 394 FunFam U-box domain-containing protein 4 23 376 - -
Seca6g02310 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Seca6g02310 394 SUPERFAMILY ARM repeat 40 344 IPR016024 -
Seca6g02310 394 SMART arm_5 235 275 IPR000225 GO:0005515
Seca6g02310 394 SMART arm_5 150 190 IPR000225 GO:0005515
Seca6g02310 394 SMART arm_5 109 149 IPR000225 GO:0005515
Seca6g02310 394 SMART arm_5 191 233 IPR000225 GO:0005515
Seca6g02310 394 SMART arm_5 66 107 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02310 Seca-Chr6 84590645 84594682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02310 23 317 U-box Gene Family AT2G23140 33.444 7.28e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02310 - - gmx:100809684 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02310 6 84590645 84594682 Seca6g02310 6 84590645 84594682 ECH
Seca8g01097 8 15854915 15861091 Seca6g02310 6 84590645 84594682 PCT